Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38407g00001 ATTGTAGCTCAGCTACAAGATTACTTTCCAGATGCTTCTTTCATGGTATTCAATTTCAGAGAAGGGGATAAGCGCAGCCAAATTGCAGACCTTTTATCTCTGTGTGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGCTGTCCACTTCTGCCTTTAGAGATGATTCATCACTTCCTTCGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGAGGGGGGTGGCCCGTGCTGGCATTTATGCTAGCCGGTCTTTTATTGTACCGAAAACAATACAGTGGGGAGCTGAAGACTCTTGAAATGGTCTACAAGCAAGCACCTAGACAACTTCTCCAGCTTTTATTACCTTTGAACCCACAACCTTCTCAGTTAAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCTCCATCAGAAACACCCTTATATTTGGATTGTTTGATTCTAAGAGTTCTTCCGTTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCCGGACCCTTCTAATCCTGCCAATAGAAGTTCTAAGCTTCTTTTCTCAACTTCAAACAATCAAAAACACGTTCGCCACTACCTGCAGGCAGAATGTATGCTCGTGAAAATTGATATTCGTTGTCGTGTTCAAGGGGATGTCGTTCTTGAGTGCATACATTTAAGCGAAGATTTCGTTCGTGAGGAGGTGATGTTTAGAGTCATGTTTCATACAGCGTTTGTACGGTCAAATATTTTGGTGCTGAGCCGCGATGAAATGGATATGTTGTGGGATACAAAGGATCAGTTCTCCAAGGATTTTAAATCTGAGGTGGTTTTTTTGGATGCTGATGCTGTTATACCTGATCTAACCACAGTCAA 911 0.427 IVAQLQDYFPDASFMVFNFREGDKRSQIADLLSLCDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGELKTLEMVYKQAPRQLLQLLLPLNPQPSQLRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDDGKGCRPVVRVYGPDPSNPANRSSKLLFSTSNNQKHVRHYLQAECMLVKIDIRCRVQGDVVLECIHLSEDFVREEVMFRVMFHTAFVRSNILVLSRDEMDMLWDTKDQFSKDFKSEVVFLDADAVIPDLTTV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38407g00001 303 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 142 IPR029021 -
Trme38407g00001 303 ProSiteProfiles C2 tensin-type domain profile. 154 293 IPR014020 -
Trme38407g00001 303 Gene3D Protein tyrosine phosphatase superfamily 1 159 IPR029021 -
Trme38407g00001 303 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 154 290 IPR035892 -
Trme38407g00001 303 Gene3D - 160 290 - -
Trme38407g00001 303 SMART PTEN_C2_2 152 292 IPR014020 -
Trme38407g00001 303 PANTHER FORMIN-J 1 302 - -
Trme38407g00001 303 Pfam C2 domain of PTEN tumour-suppressor protein 153 290 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38407g00001 Trme-Chr38407 1 1066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38407g00001 1 302 FH2 protein (formin) Gene Family AT5G07740 77.815 5.45e-169 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38407g00001 - - tpra:123913936 604.749