Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38355g00001 ATGATTCAAGAGCTTGATTTATGTGAAGTACCAACTGTTTTCATTTGTCCAATCTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTATGAGAGGAACAACATTCTCAAATGGTTTAACCTAGGACACTTCACATGTCCCACAACTATGCAAGAGCTTTGGGATGATTCAATCACTCCAAACACAACGCTTTATCGCCTTATATACACTTGGTTCTCTCAGAAGTACTTGTTGATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTGAAGGGTCAAGCTCGTGTTCATGCCTTGAAGGAACTTCATCATGTTGTGGCTGTTCATGCCACTGCTCGTAAGTCTGTGATTGATGGAGGTGGTGTTTCTGTTTTGTCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGCTCTGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCCAAAAAGAATCTTATGCAACCTGCTAAGATTTCATTGATGGTTGACATCTTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACGCGGTTGATTGAATCGTTAATTGAGGAGAAGGATTTTCGTTCCGAGATTATCTCCAGCCATAGTCTTTTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACACAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAGAACAGTGTGCTTCTATAAGGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTTGAATTGTTGTCTGGTATGGAGCATGAATGTTTGGAATTAGCCCTTTGCGTTTTGGATTCGTTGTCGTCGATACCCGAAGGCAGAGTAGCTTTGAAGGATTGTGTTAGCACCATACCCATCATGGTGAGACTTTTGATGAGGATCTCAGAAAGCTGCACTCAGTATGCATTGTCGATTTTGTGGTCTGTTTGCAAGCTTGCGCCGGAGGAGTGTTCGTCAATTGCCGTCGATGCTGGGCTTGCTGC 1046 0.4197 MIQELDLCEVPTVFICPISLEPMQDPVTLCTGQTYERNNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHHVVAVHATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTVCFYKEVKILLVSIGAVSQLVELLSGMEHECLELALCVLDSLSSIPEGRVALKDCVSTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38355g00001 349 Pfam U-box domain 10 80 IPR003613 GO:0004842|GO:0016567
Trme38355g00001 349 PANTHER WDSAM1 PROTEIN 6 341 IPR045185 GO:0061630
Trme38355g00001 349 Gene3D - 83 348 IPR011989 -
Trme38355g00001 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Trme38355g00001 349 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Trme38355g00001 349 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Trme38355g00001 349 CDD RING-Ubox_PUB 11 61 IPR045210 -
Trme38355g00001 349 SUPERFAMILY RING/U-box 5 80 - -
Trme38355g00001 349 SUPERFAMILY ARM repeat 97 344 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38355g00001 Trme-Chr38355 1 1046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38355g00001 1 349 U-box Gene Family AT3G49810 73.066 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38355g00001 - - gmx:100779827 625.165