Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38269g00001 TATAACAGTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCAGACACAAAAACTTGGTTCGCCTTTTGGGGTTCTGCGTTGAGGGAACTCACAGGATCTTAGTATATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCATGGTGCTATGCGTCACCATGGCTATCTTACGTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCCAAAGCGCTTGCGTATTTGCATGAAGCAATTGAGCCGAAGGTGGTACACCGAGATATCAAGTCAAGTAACATATTAATTGACGATGATTTCAATGCTAAGGTTTCTGATTTTGGTCTTGCCAAATTATTGGGTGCTGGGAAGAGTCATGTCACAACCCGAGTTATGGGAACCTTTGGATATGTAGCTCCTGAATATGCAAACACCGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTGTTGGAAGGAATTACTGGAAGAGATCCAGTCGATTATGGTCGTCCGACAAATGAAGTGAGTAAACTAATTTTATCTTTGGCGCAATATCCAGCTTGA 579 0.4231 YNSGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGTHRILVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPTNEVSKLILSLAQYPA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38269g00001 192 SMART serkin_6 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38269g00001 192 Gene3D Transferase(Phosphotransferase) domain 1 46 190 - -
Trme38269g00001 192 SUPERFAMILY Protein kinase-like (PK-like) 5 182 IPR011009 -
Trme38269g00001 192 Gene3D Phosphorylase Kinase; domain 1 1 45 - -
Trme38269g00001 192 FunFam Putative receptor-like serine/threonine-protein kinase 45 189 - -
Trme38269g00001 192 Pfam Protein kinase domain 6 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38269g00001 192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 91 103 IPR008271 GO:0004672|GO:0006468
Trme38269g00001 192 PANTHER OS01G0323000 PROTEIN 2 181 - -
Trme38269g00001 192 ProSiteProfiles Protein kinase domain profile. 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38269g00001 Trme-Chr38269 2 943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38269g00001 3 181 Trihelix Transcription Factor Family AT1G70460 57.542 5.58e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme38269g00001 Pkinase 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38269g00001 - - lja:Lj1g3v4804250.1 361.688