Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3824g00001 AGGTCAACAGGAGATATTGACATTGACAAGATACGGAATTCTAAATACTTTCAAGCTCTTCTTAAGCCATCTAAAGAAAAAGATTGCAATCAATTGGTTGATCAACGGGGGAAGCAAAACAAGACAGGCAGAGAAGCATCAAAGGAAGTGGTGCAAACAAAGTTAACATCAATATATGGGAAAAGCAGCTTGAGGACTAGTAATGGTTCCAAAAGTTTTTTCAACTTGAAAAATAACAACTCTGAGGACTGCATAGTTATTGGAAGGCCTCAATCACATGGCATCCATACAAAGGGTCCTGGTGTCTCTTCCGTTTTTGATGTTGAAGGAGAAGGAAGAGCTTGTGGAAACACTTTTCCGACAAAACGTGCACACGTGGAAAATACTAGCCCCAGAGTTGGTTATGTCAAGTCACCTTCAATCAAGGAGGAAGTTAATCCTGATGTTGCTGGCAATGGGTTTGTTACTGCCAGAGCAAAGTTGGAAATGGATGTAAAGCAAAAGCAGGGTGCAATTGGTTCACCCAGTGCACCTGTCTCACCACAATGCGACAACAATCCTGCCAACAGGCTATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCATCCGCGGTAATTTTGTCCCCCCTATTAAATCCAATGGGAGCAATACTGGAAATATGACTTCCCGAATTGCTGGCAACAAAAGTGGTGATTCTTTAGATGAGTCTACAAAGAAATGTTTGGAAATGCTGTATGGTCCTGATGGTGAACTTCCTGAGAAACTAAGAAATTTAGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGAATAAAGATCCCAATGTCCGCTGGGATGACATTGCTGGATTGGCCCATGCCAAACATTGTGTCAGTGAGATGGTCATATTACCTCTGCAACGTCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAGAGGTCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGGTAGGAAAAGCCATAGCTGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACTAGCAAATGG 1065 0.43 RSTGDIDIDKIRNSKYFQALLKPSKEKDCNQLVDQRGKQNKTGREASKEVVQTKLTSIYGKSSLRTSNGSKSFFNLKNNNSEDCIVIGRPQSHGIHTKGPGVSSVFDVEGEGRACGNTFPTKRAHVENTSPRVGYVKSPSIKEEVNPDVAGNGFVTARAKLEMDVKQKQGAIGSPSAPVSPQCDNNPANRLYGGRSYGVSRRGIRGNFVPPIKSNGSNTGNMTSRIAGNKSGDSLDESTKKCLEMLYGPDGELPEKLRNLEPRLIEHVSNEIMNKDPNVRWDDIAGLAHAKHCVSEMVILPLQRPDLFMGCRSPGRGLLLFGPPGTGKTMVGKAIAGEAKATFFYISASSLTSKW 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3824g00001 355 Pfam ATPase family associated with various cellular activities (AAA) 318 355 IPR003959 GO:0005524|GO:0016887
Trme3824g00001 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 354 IPR027417 -
Trme3824g00001 355 MobiDBLite consensus disorder prediction 211 233 - -
Trme3824g00001 355 PANTHER AAA DOMAIN-CONTAINING 207 355 - -
Trme3824g00001 355 MobiDBLite consensus disorder prediction 204 235 - -
Trme3824g00001 355 Gene3D - 253 355 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3824g00001 Trme-Chr3824 119 2325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3824g00001 232 355 Calmodulin-binding Proteins AT3G56690 31.298 7.51e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3824g00001 K22766 - gmx:100776024 555.058