Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38231g00001 ATGGAAGGAAAAAATTGGAGATCAACAATTAAGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACCATTAAGGATGCTATTGGTTCTTACCCTAAGGGAAACAAAGGAAGATATATTATCTATGTTAAAGCTGGTGTCTATGAAGACGAGAACGTCACTGTCACCAAAGATTGCCAAAACTTGCTTATGTATGGTGATGGCCCTCAAATGACCATTATCACCGGTAAAAGTAACTATGGCATAAATGGTACCAAGACCATGTACACCGCCACCTTTTCCAACACTGCAAAGTGGTTCATGGCAAAGGCAATGACATTTCGGAACATAGCTGGTCCTGATGGTCATCAAGCTGTTGCTTTTAGAAACACAGGAGATCAGTCTGCTTTCTTCGATTGCCATTTCTTAGGTTACCAAGACACCTTGTACGTTCAAGCCAACAGGCAATTCTACCGCAACTGTGTTATCTATGGTACCATCGATTTCATCTTTGGAACATCAAACGCCTTGATCCAACACTCTACGATCTTCGTAAGGAAGCCCAATAACGGTCAAAATAACACAATTACCGCAGACGGATCAGAAGATTCCAAGAAGTCAAACACTGGTATTGTGATCCAGGACTGCCAGATCCTCGCAGAGGCAGAATTGGTCCCTGTAAAGGACCAAATCCCAACTTACTTGGGCAGGCCATGGAAGACAAATTCAAGGACAGTCTTCATGGAATCCKWCATCGGTGACTTTATTAATCCAGATGGATGGATCCCTTGGAAAGATGAGAACGGTACTGATATAAATTTTGACACATGTTACTATGCAGAGTATGCCAACACTGGACCTCGTGCCGATATTTCCGGAAGGATCAAGTGGAAGGGTTATCACG 892 0.4271 MEGKNWRSTIKPNVVVAKDGTGQFKTIKDAIGSYPKGNKGRYIIYVKAGVYEDENVTVTKDCQNLLMYGDGPQMTIITGKSNYGINGTKTMYTATFSNTAKWFMAKAMTFRNIAGPDGHQAVAFRNTGDQSAFFDCHFLGYQDTLYVQANRQFYRNCVIYGTIDFIFGTSNALIQHSTIFVRKPNNGQNNTITADGSEDSKKSNTGIVIQDCQILAEAELVPVKDQIPTYLGRPWKTNSRTVFMESXIGDFINPDGWIPWKDENGTDINFDTCYYAEYANTGPRADISGRIKWKGYH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38231g00001 297 PANTHER PECTINESTERASE 11 297 - -
Trme38231g00001 297 FunFam Pectinesterase 4 10 297 - -
Trme38231g00001 297 Pfam Pectinesterase 13 297 IPR000070 GO:0030599|GO:0042545
Trme38231g00001 297 SUPERFAMILY Pectin lyase-like 8 296 IPR011050 -
Trme38231g00001 297 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Trme38231g00001 297 Gene3D - 7 297 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38231g00001 Trme-Chr38231 28 1008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38231g00001 10 296 Carbohydrate Esterase AT2G26450 52.613 2.76e-99 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38231g00001 K01051 - gmx:100781507 404.445