Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38210g00001 ATGTTATTGCAGTTTAATATTGGAAGGGACAAGATTGCTAATGTGCTCTATACAGTCAGCGAAGCAGGTGTTAGTTCCGATAAAAGTCAAGAACAGCAGGCCCTTCTTGTGGAATCCAGAAGACAGGAGGTAATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATAGGTGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTG 280 0.4036 MLLQFNIGRDKIANVLYTVSEAGVSSDKSQEQQALLVESRRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMI 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38210g00001 93 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 55 93 IPR000727 -
Trme38210g00001 93 Gene3D - 6 93 - -
Trme38210g00001 93 SUPERFAMILY t-snare proteins 29 93 IPR010989 GO:0016020|GO:0016192
Trme38210g00001 93 Pfam Syntaxin 58 90 IPR006011 GO:0016020
Trme38210g00001 93 PANTHER SYNTAXIN 29 93 IPR045242 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38210g00001 17 93 SNARE and Associated Proteins AT5G46860 71.429 8.15e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38210g00001 - - psat:127102910 110.923