Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38203g00001 ATGCTTGGAGTTGTTTACCGTGATTTGAAACCAGAAAACATTCTTGTTCGAGAAGACGGTCACATTATGCTCACAGATTTTGACCTTTCACTCAGGTGTGACGTTAGCCCAACACTTCTGAAATCATCTTCTGATGTAGATCCTGCCAAGGTTTCTGGTACATGCACAAAGTCAAGCTGCATTGAGCCATTCTGCATTGAACCATCTTGTCAAGTTGCGTGCTTCAGTCCTAGATTCTTACCACCTGCGGCAAAAGCAAGGAAACTAAAAGCTGATCTTGCTGCTCATATCAGATCATTGCCGCAGCTTGTGGCAGAGCCCACGGATGCAAGATCAAATTCCTTTGTTGGTACGCATGAATACCTAGCACCTGAGATCATCAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTTTATATGGTAGAACACCCTTCAAAGGTTCTAACAATGAAGAAACATTAGCCAACGTCGTCTTGCAAAATCTCAGATTCCCTGATAGCCCATTTGTTAGTTTCCAAGCAAGGGATCTTATTAAAGGGTTGTTAGTTAAAGAGCCTGAAAACCGTTTAGGTACAGAGAAAGGCGCTGCAGAGATTAAACAACATCCCTTCTTCGAGGGCCTTAATTGGGCATTAATACGTTGTGCTATCCCACCAGAACTTCCTGACCTTTGTGAATTTGAATTGGGACTTTCAGACATGATTGCACAATCACAAAGCAAGGATGGCAAATTTTTAGAGTGTACAACAACAGGAGAACAAGTGGAATTTGAGTTGTTTTAG 813 0.4231 MLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSSDVDPAKVSGTCTKSSCIEPFCIEPSCQVACFSPRFLPPAAKARKLKADLAAHIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQNLRFPDSPFVSFQARDLIKGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFELGLSDMIAQSQSKDGKFLECTTTGEQVEFELF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38203g00001 270 Gene3D Transferase(Phosphotransferase) domain 1 1 232 - -
Trme38203g00001 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 4 16 IPR008271 GO:0004672|GO:0006468
Trme38203g00001 270 SUPERFAMILY Protein kinase-like (PK-like) 3 239 IPR011009 -
Trme38203g00001 270 Pfam Protein kinase domain 112 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38203g00001 270 Pfam Protein kinase domain 3 36 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38203g00001 270 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38203g00001 270 FunFam serine/threonine-protein kinase D6PK-like 110 233 - -
Trme38203g00001 270 SMART serkin_6 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38203g00001 270 PANTHER FLIPPASE KINASE 1-RELATED 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38203g00001 Trme-Chr38203 4 816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38203g00001 1 270 AGC Kinase Gene Family AT3G52890 70.968 6.25e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme38203g00001 Pkinase 3.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38203g00001 - K08286 gmx:100813470 477.633