Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3818g00001 ATGCAAGATAAAGAGTATTCCTTGAAGCAATTATCTGAGCTTATTGATACGCGTGAAAATGCCTTTAGTGCAGTTGGATCTCATTCTCAAGCAGTTCCGGTGCTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAATTAAGGGTGAAAGTCTTGCTTGGAGGATGTATTCCTCCTTTGCTCGGTCTACTAAAGTCCAGTTCTGAAGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCTCAAGGTGATGCCAAAGATCATGTTGGATCAAAAATATTTTCTACTGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAAAAGGGCCTAAAGAGTGGAAGTGTAGTAGATAGTTTATTGACTGGAGCATTGAAAAATCTCTACAGCAGTACTGAGAGATTCTGGAATTCGACAATACAGGCTGGAGGAGTGGACATATTGCTGAAGTTACTGACAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAAGATGCAGCTTTTTGTTCAAAGGTATTGACAGCAGATGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCAGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCAGCCCAGTGCCAAGATGCAAGGAAAGAGATAGCCAATTGTAATGGCATTCCTGCTTTAATTAATGCTACCATTGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCGATACAGGAGAATGCTATGTGTGCTCTTGCAAACATCTCTGGCGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAGTCATGCTCCTCACCGACCCAAACTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCGACTAGAGCATCAGATCCTTTGGCAGTTGAGCAGACATTACTTGAGCAATTCAAACCACGATCGCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCTATACTCTCACTGAAACTTGCAAATTCTGATGCAAAGCGTCTGCTTGTTGGTCTAATAACAATGGCCGCTAATGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTGTCCAATAGTGAGTGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAACTATTAATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAATGTGCTGTTGCCCTGCTCTGTCTTTTGTCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAGATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCGGCAACAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCAGTTCCTGCATTGTTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGATACGGCAACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAGTCTAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACGTGAAGGTAGTGCTGCCAATGATGCGATCAATACAATGATAAAGTTATTGAGCTCTACAAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCTTTGTCAGGAATTTTTGAAACAAGGAAAGATTTGAGAGAAAGCAATGTTGCTGTTAAAACTCTTCGGTCAGCCATGAAGTTGCTTAATATTGAATCTGGAAGTATCTTAGTGGAGTCCTCACGCTGCCTAGCTGCAATATTTCTTTCCATCAAAGAAAACAAAGAGGTGGCTGCTAATGCTAGTGATGCATTATCCTCCCTAGTTGCACTAGCTAGCTCTTCAGATTTGGAAGTAGCAGAGCTGGCAACATGTGCTGTGGCAAACCTTTTTTTGGATAGTGAAATTGCTGAGAATGCTGTTGCGGAGGAAGTTATTTTGCCTGCTACCAGAGTATTGCGTGAAGGCACAAAATCTGGAAAAACACATGCAGCAGCAGCAATTGCTCGCCTTTTGCATTCTAGGCAAGTTGATTATGCT 2229 0.4266 MQDKEYSLKQLSELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSEEGQVAAAKTIFAVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKSGSVVDSLLTGALKNLYSSTERFWNSTIQAGGVDILLKLLTTGQSSTLANVCFLLACMMMEDAAFCSKVLTADATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCQDARKEIANCNGIPALINATIAPSKEFMQGEYAQAIQENAMCALANISGGLSYVISSLGQSLESCSSPTQTADTLGALASALMIYDDKAESTRASDPLAVEQTLLEQFKPRSPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLSNSECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLREGSAANDAINTMIKLLSSTKEETQAKSASALSGIFETRKDLRESNVAVKTLRSAMKLLNIESGSILVESSRCLAAIFLSIKENKEVAANASDALSSLVALASSSDLEVAELATCAVANLFLDSEIAENAVAEEVILPATRVLREGTKSGKTHAAAAIARLLHSRQVDYA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3818g00001 743 SUPERFAMILY ARM repeat 538 735 IPR016024 -
Trme3818g00001 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 502 IPR000225 GO:0005515
Trme3818g00001 743 Gene3D - 3 329 IPR011989 -
Trme3818g00001 743 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 2 742 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trme3818g00001 743 Gene3D - 575 742 IPR011989 -
Trme3818g00001 743 SMART arm_5 491 531 IPR000225 GO:0005515
Trme3818g00001 743 SMART arm_5 654 695 IPR000225 GO:0005515
Trme3818g00001 743 SMART arm_5 17 59 IPR000225 GO:0005515
Trme3818g00001 743 SMART arm_5 60 100 IPR000225 GO:0005515
Trme3818g00001 743 SMART arm_5 449 489 IPR000225 GO:0005515
Trme3818g00001 743 SMART arm_5 235 284 IPR000225 GO:0005515
Trme3818g00001 743 SMART arm_5 192 233 IPR000225 GO:0005515
Trme3818g00001 743 Pfam Armadillo/beta-catenin-like repeat 449 489 IPR000225 GO:0005515
Trme3818g00001 743 Pfam Armadillo/beta-catenin-like repeat 28 58 IPR000225 GO:0005515
Trme3818g00001 743 Coils Coil 221 241 - -
Trme3818g00001 743 Gene3D - 330 574 IPR011989 -
Trme3818g00001 743 SUPERFAMILY ARM repeat 11 566 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3818g00001 Trme-Chr3818 24 2252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3818g00001 412 544 U-box Gene Family AT2G23140 40.741 1.53e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3818g00001 - - gmx:100816765 1239.56