Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38111g00001 ATGGAAAAGATAAAGTTTGTGAAAAATGGAGTAAGCAATAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGACGAAGAGCTTGTCTTTCAGTACTTGAAATGTAAGACCTTCTCCTATCAGTTGCCAGCTTCAATCATTCCTGAGATCAATATCTGCAAGTATGATCCTTGGGATTTGCCAGGAAATCATGGTGAGCCAGATATGTATTTCTTCAGTGCTAAGGAAGCCAAGTATCGGAATGGCAATCGCATGAACAGATCAACCAACTCTGGCTATTGGAAAGCGACAGGATCGGATAAGAAAGTTAGTGTTTCTTCATCAATAAGTAATGGAGGAATTGCGGGGATAAGAAAAAGTCTTGTATTTTATCGAGGAAAATCTCCAAATGGAACTCGAACGCATTGGATCATGCATGAATATCGTCTAGTTAGTGTAGAAACTACTCCTTGTAATCAGGAACGTCACTCTAGCAATTAA 480 0.3937 MEKIKFVKNGVSNKLPPGFRFQPTDEELVFQYLKCKTFSYQLPASIIPEINICKYDPWDLPGNHGEPDMYFFSAKEAKYRNGNRMNRSTNSGYWKATGSDKKVSVSSSISNGGIAGIRKSLVFYRGKSPNGTRTHWIMHEYRLVSVETTPCNQERHSSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38111g00001 159 ProSiteProfiles NAC domain profile. 15 159 IPR003441 GO:0003677|GO:0006355
Trme38111g00001 159 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 145 - -
Trme38111g00001 159 SUPERFAMILY NAC domain 12 147 IPR036093 GO:0003677|GO:0006355
Trme38111g00001 159 Gene3D NAC domain 24 159 IPR036093 GO:0003677|GO:0006355
Trme38111g00001 159 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38111g00001 Trme-Chr38111 282 971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38111g00001 1 143 NAC Transcription Factor Family AT5G13180 65.035 1.22e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme38111g00001 NAM 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38111g00001 - - aprc:113868555 240.736