Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38079g00001 ATGGTTATGACGAAAAATAAACCCAATATCAAGAGAGGGAACATATCAGATGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTTCTTGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCGGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTTAATCAAATAGGGGAAAAACCAGAAACTTCCACTGCACAAGAAACTACAGCTCAGGACAATGTTGCTGGGGATAGTGGTATGTTAGAGAATAAAGATTCAGTTAATGGAAGTATTGATTCAGATGTTATCTTTGATGTGAATGAATTCTTAGACTTTTCCACTGAAGAATCGTTTGGGTTTGATTGGGTGAATAAATTCTTGGAGTTAGATCAGATTCAGTTTCTTGAGAACACAGAAAGATCTGAGTGA 432 0.3657 MVMTKNKPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQIGEKPETSTAQETTAQDNVAGDSGMLENKDSVNGSIDSDVIFDVNEFLDFSTEESFGFDWVNKFLELDQIQFLENTERSE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38079g00001 143 CDD SANT 16 57 IPR001005 -
Trme38079g00001 143 ProSiteProfiles Myb-like domain profile. 7 57 IPR001005 -
Trme38079g00001 143 MobiDBLite consensus disorder prediction 68 91 - -
Trme38079g00001 143 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 4 81 - -
Trme38079g00001 143 SMART sant 11 59 IPR001005 -
Trme38079g00001 143 FunFam transcription repressor MYB5-like 16 83 - -
Trme38079g00001 143 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 61 IPR017930 -
Trme38079g00001 143 MobiDBLite consensus disorder prediction 68 84 - -
Trme38079g00001 143 SUPERFAMILY Homeodomain-like 5 64 IPR009057 -
Trme38079g00001 143 Gene3D - 16 85 - -
Trme38079g00001 143 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38079g00001 Trme-Chr38079 356 1036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38079g00001 3 127 MYB Transcription Factor Family AT3G13540 45.255 2.95e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme38079g00001 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38079g00001 K09422 - gmx:100799575 193.356