Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38077g00001 ATGGCGTCTCTACAACACACCACAGCTTCACTCCATTCCAAACCCATCCCCAAAATCACAAACATCCTCACCCAAAAACCCATCCTCAACTTCTCCCTTTCCAGCACCACAACCTTCACTTCCCCCAAACTCAAATTCTCCATAACCAAAACCCGCCGCACCACCGGCGGAGGAGCACTCGGTTCCACAATGTCATCCCCAGCCGCCGGCAGCTACGCAACCGCTTTAGCCGACTTAGCTATATCAAACAACACCCTCGACGCCACAACCGCAGACGTTGACAAAATCGATGAACTTTTTTCTGACCGCAAGGTGTTTGATTATTTTTCCAGCCCAATTATCGATGATGACACGAAACGCAAATTAATAGCAGAGTTTGCTACTTCATCTGGGTTTCAACCACACACACAAAACTTCCTTAACATTTTGATTGAGTCTAAGAGGATCGATATCATCAACGACATTGTTAAGGAGTTTGAACTTGTTTACAATCGTTTGACTGATACTGAGCTTGTGGTTGTGACTTCGGTTGTGAAGTTGGAGTCTCAGCATTTGGCGCAGATTGCGAAACAGGTTCAGAAGCTTACTGGGGCTAAGAATGTGAGGATTAAGACTGTTCTTGATTCGAGTTTGGTAGCTGGTTTTACTATCAGGTATGGGAATTCTGGCTCTAAGTTTATTGATATGAGTGTTAAGAAGAAACTTGAGGAAATTGCTGCTCAACTTGATTTGGGTGATATCAAACTCGCGGTATGA 756 0.4458 MASLQHTTASLHSKPIPKITNILTQKPILNFSLSSTTTFTSPKLKFSITKTRRTTGGGALGSTMSSPAAGSYATALADLAISNNTLDATTADVDKIDELFSDRKVFDYFSSPIIDDDTKRKLIAEFATSSGFQPHTQNFLNILIESKRIDIINDIVKEFELVYNRLTDTELVVVTSVVKLESQHLAQIAKQVQKLTGAKNVRIKTVLDSSLVAGFTIRYGNSGSKFIDMSVKKKLEEIAAQLDLGDIKLAV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38077g00001 251 Hamap ATP synthase subunit delta [atpD]. 64 244 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 PRINTS ATP synthase delta subunit signature 148 162 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 PRINTS ATP synthase delta subunit signature 199 214 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 PRINTS ATP synthase delta subunit signature 68 87 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 PRINTS ATP synthase delta subunit signature 217 235 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 PRINTS ATP synthase delta subunit signature 137 148 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 201 220 IPR020781 GO:0015986|GO:0016020|GO:0046933
Trme38077g00001 251 PANTHER ATP SYNTHASE DELTA CHAIN 52 243 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 Gene3D - 68 160 IPR026015 -
Trme38077g00001 251 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 66 167 IPR026015 -
Trme38077g00001 251 NCBIfam ATP synthase F1 subunit delta 69 242 IPR000711 GO:0015986|GO:0046933
Trme38077g00001 251 Pfam ATP synthase delta (OSCP) subunit 69 242 IPR000711 GO:0015986|GO:0046933
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38077g00001 1 250 Primary Pumps ATPases AT4G09650 54.800 1.76e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38077g00001 K02113 - gmx:100815063 318.546