Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38056g00001 ATGGCTTCTGGTCTTCATAAAATGGGTGTTTCACAGGGTGATGTTGTTTTGCTTCTACTTCCAAATTCAATTTACTATCCGGTTGTACTATTGGGTGTTATGTACCTAGGTGGTGTTGTTACACCATTATATCCTCTTAGTAGTGTTGGCGAAATTCGTAAGCAGGTTAATGAGTGTGGTGCACGTTTTGCTTTTACTATACCTGAGAATGTTAAGAAACTGGAGCCATTAGGCATGCCTATTATTGTTGTGCCGGAAAATGAGAAGGGTTTGAAGCATGAATGTTTCTCATGTTTTTTTAACCTGATTTATGGTAACTTTGATTTGGCTCAAAAGCCGGTTATTAAACAAGAAGACACTGCTATTATATTGTATTCTTCTGGTACTACAGGTGCGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTGCTGTGCGTTATGGATTGACTGAGTCGAGTGGAGTAGGAGCAAGCGGTTTCAATACAGAAAAGTTTCACAACCATTCTTCACTAGGGCTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGATTGGAATAGTGGTGCATTTTTGCCCCCAGGCAGCAGTGGTGAGATATGGTTGAGAGGGCCTTCAATTATGAAAG 628 0.4013 MASGLHKMGVSQGDVVLLLLPNSIYYPVVLLGVMYLGGVVTPLYPLSSVGEIRKQVNECGARFAFTIPENVKKLEPLGMPIIVVPENEKGLKHECFSCFFNLIYGNFDLAQKPVIKQEDTAIILYSSGTTGASKGVVLTHRNLIAVRYGLTESSGVGASGFNTEKFHNHSSLGLLAPNMEAKVVDWNSGAFLPPGSSGEIWLRGPSIMK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38056g00001 209 Gene3D Luciferase; Domain 3 166 209 - -
Trme38056g00001 209 SUPERFAMILY Acetyl-CoA synthetase-like 1 209 - -
Trme38056g00001 209 Gene3D - 1 145 IPR042099 -
Trme38056g00001 209 ProSitePatterns Putative AMP-binding domain signature. 123 134 IPR020845 -
Trme38056g00001 209 Gene3D - 147 165 - -
Trme38056g00001 209 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 147 209 - -
Trme38056g00001 209 Pfam AMP-binding enzyme 1 145 IPR000873 -
Trme38056g00001 209 Pfam AMP-binding enzyme 148 209 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38056g00001 Trme-Chr38056 71 1042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38056g00001 138 209 Monolignol Biosynthesis Gene Families AT4G19010 62.500 1.83e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38056g00001 K01904 - gmx:100804808 208.764