Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38022g00001 ATGGCGGACTCTGACAACGATTCCGGCGGTCCACACGGCGGATCGAACGCTCACGGCAGCGAGATGTCACCGAGAGAACAAGACCGATTCCTTCCGATAGCGAACGTAAGCAGGATCATGAAAAAAGCACTTCCAGCGAACGCGAAGATCTCAAAAGACGCAAAGGAAACAGTTCAGGAGTGTGTTTCAGAGTTCATCAGCTTCATCACCGGCGAAGCTTCCGACAAGTGTCAACGTGAGAAGCGTAAGACAATCAACGGTGACGATTTGCTTTGGGCGATGACGACGCTTGGATTTGAGGAATACGTGGAGCCTCTCAAAGGCTACCTTCAACGGTTTAGGGAGATGGAAGGAGAGAAGACTGTGGTGGCGCGTGACAAGGACGCGCCTCAAGGTTCTAATAGTGTTAACAACAGTTCCTTTGAGAGTGGTAGTTATGGTGGTGGAATCATGATGCATCAAGGACACGTGTACGGTTCTGGTGGGTTTCAAGTTATTGGTAAGGGTGGGCCTGGTTATCCTGGGCCTGGATCTAATCCTGGTAGGCCCAGATAG 555 0.5099 MADSDNDSGGPHGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVVARDKDAPQGSNSVNNSSFESGSYGGGIMMHQGHVYGSGGFQVIGKGGPGYPGPGSNPGRPR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38022g00001 184 MobiDBLite consensus disorder prediction 122 141 - -
Trme38022g00001 184 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
Trme38022g00001 184 Gene3D Histone, subunit A 17 142 IPR009072 GO:0046982
Trme38022g00001 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Trme38022g00001 184 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Trme38022g00001 184 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Trme38022g00001 184 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Trme38022g00001 184 MobiDBLite consensus disorder prediction 1 28 - -
Trme38022g00001 184 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trme38022g00001 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme38022g00001 184 MobiDBLite consensus disorder prediction 163 184 - -
Trme38022g00001 184 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38022g00001 Trme-Chr38022 129 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38022g00001 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.671 6.63e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme38022g00001 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38022g00001 K08065 - gmx:100813169 278.87