Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme380096g00001 CTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCACCAAGAATGCGAGCAAGTGGTTCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGATTTGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGCCATTGGTGATACCTCTGATAAAGATACTAGTACAATTGGAATAAAAGGGACTGTTGGTTATGCTCCACCTG 241 0.39 LSHRLNIIIDVASALHYLHQECEQVVLHCDLKPSNVLLDDDLVAHVSDFGIARLVSAIGDTSDKDTSTIGIKGTVGYAPP 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme380096g00001 80 ProSiteProfiles Protein kinase domain profile. 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme380096g00001 80 ProSitePatterns Serine/Threonine protein kinases active-site signature. 26 38 IPR008271 GO:0004672|GO:0006468
Trme380096g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 2 80 IPR011009 -
Trme380096g00001 80 Gene3D Transferase(Phosphotransferase) domain 1 1 80 - -
Trme380096g00001 80 Pfam Protein kinase domain 6 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme380096g00001 80 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme380096g00001 Trme-Chr380096 72 312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme380096g00001 1 80 Receptor kinase-like Gene Family AT3G47570 60.494 1.40e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme380096g00001 Pkinase 2.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme380096g00001 - - mtr:11411980 140.584