Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38005g00001 AAGGAAAGATCTAGAATTAGTCCTCAGTTAGGTGTTTACAAGCGTGATTTTGTTTGTTACCGATCAGGGTTTGCACCGGTAAAGAGGAAGGCTAATGGTGAACATCAGAGAGATAGGAAATCGGTGAGGTGTGGATGTGATGCTAAAATGTATCTATCTAAGGAGGTTGTTGATGGTGTTTCTCAATGGTTTGTTGTTCAGTTTAGTAATATACATAATCACGAACTTTTGGAAGATGATCAAGTTCGCCTTTTACCTGCGTATAGGAAAATTCACGAGGCTGATCAAGAGCGTATATTGTTGCTTTCGAAAGCCGGGTTTCCAATACATCGGATAGTGAAAATGCTTGAGGTTGAAAAGGGGATTCAAGGCGGACATTTGCCTTTCTTGGAAAGAGATGTGAGGAACTTTGTCCAAAACCGCAAGAAGATTGTTCAAGAGAATGAGGCATTGCTAAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGTGTGCAAAGCAATGAAAGAAGCTGATGTTGAGTTTGTTTATGATTTTAC 545 0.3945 KERSRISPQLGVYKRDFVCYRSGFAPVKRKANGEHQRDRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEVEKGIQGGHLPFLERDVRNFVQNRKKIVQENEALLSEKRENDVLELLEVCKAMKEADVEFVYDFT 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38005g00001 182 PANTHER OS01G0519700 PROTEIN 12 151 - -
Trme38005g00001 182 Pfam FAR1 DNA-binding domain 4 77 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38005g00001 Trme-Chr38005 527 1071 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme38005g00001 FAR1 3e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38005g00001 - - gmx:100817107 350.903