Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme379960g00001 GTGGAGGAATTCAAGAATGAAGTAATGTTGATCGCCAAATTGCAGCATCGAAACCTTGTCAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTCCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATTTCCAGCTACGCGGTACAACACTCTCAAACAACGAAACTGCAGGTTAG 183 0.4153 VEEFKNEVMLIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFQLRGTTLSNNETAG 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme379960g00001 60 Gene3D Phosphorylase Kinase; domain 1 1 38 - -
Trme379960g00001 60 Pfam Protein tyrosine and serine/threonine kinase 2 51 IPR001245 GO:0004672|GO:0006468
Trme379960g00001 60 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 48 - -
Trme379960g00001 60 SUPERFAMILY Protein kinase-like (PK-like) 2 52 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme379960g00001 Trme-Chr379960 80 262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme379960g00001 2 48 Receptor kinase-like Gene Family AT4G11530 63.830 1.26e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme379960g00001 PK_Tyr_Ser-Thr 4.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme379960g00001 - - lja:Lj0g3v0351749.1 92.8189