Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37995g00001 ATGAGTTCAGGAAGCAGCAAAGACAAAGAGAAGGCGAGAGTGAGCCGCACGTCACTCATATTATGGCACGCTCACCAAAACGACGCCGCTGCGGTTAGGAAGCTTCTTCAAGAAGATCCTTCTCTTGTCAATGCTACAGATTACGATAACCGCACTCCTCTTCACGTCGCTTCCCTCCACGGTTGGATCGAAGTCGCTAAATGCTTAATTGAATTCGGCGCCGATGTCAACGCTCAAGATCGTTGGAAAAACACCCCTTTGGCTGATGCAGAAGGATCTAAAAGGACTAATATAATCGAGCTTTTGAAATCACATGGAGGATTGTCTTATGGCCAAACTGGAAGCCATTTTGAAACCAGGGTGGTTCCGCCACCGTTGCCTAACAAGTGTGACTGGGAAGTTGATCCCTCTGAGCTTGACTTCTCAAGTGCTGCGCGTATTGGAAAGGTATTGCCTC 457 0.4814 MSSGSSKDKEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVNATDYDNRTPLHVASLHGWIEVAKCLIEFGADVNAQDRWKNTPLADAEGSKRTNIIELLKSHGGLSYGQTGSHFETRVVPPPLPNKCDWEVDPSELDFSSAARIGKVLP 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37995g00001 152 Pfam Ankyrin repeats (3 copies) 24 105 IPR002110 GO:0005515
Trme37995g00001 152 SMART ANK_2a 49 78 IPR002110 GO:0005515
Trme37995g00001 152 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12 24 107 - -
Trme37995g00001 152 Gene3D - 1 117 IPR036770 -
Trme37995g00001 152 ProSiteProfiles Ankyrin repeat profile. 49 81 IPR002110 GO:0005515
Trme37995g00001 152 ProSiteProfiles Ankyrin repeat region circular profile. 49 81 - -
Trme37995g00001 152 SUPERFAMILY Ankyrin repeat 20 107 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37995g00001 2 149 MAP Kinase Kinase Kinase AT1G14000 79.730 8.40e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37995g00001 - - jcu:105630485 272.322