Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37978g00001 ATGAAGCAATTGTTATCTGCTGTCGAGTACTTTCACTCGCGGGGTGTGATGCACCGGGACATCAAAGGATCCAATCTTCTGGTGAATAATGAAGGAATATTGAAGGTGGCAGATTTTGGATTGGCGAACTTCATTAGGTCTGGGAAAAAACATCCCCTCACTAGTCGTGTTGTCACATTATGGTATCGTCCACCGGAGCTTTTGCTTGGTTCCACGGATTATGATTCGTCTGTGGATCTTTGGAGTGTTGGCTGCGTCTTTGCGGAGCTACTTGTTAGGATTCCTATACTTCAGGGGAAAACTGAGGTAGAACAATTACACAAAATTTTCAAGCTTTGTGGCTCCCCGTCTGATGAATACTGGAAAAGGACTGAACTTCCTCGTGCAACTTTGATATATAATGGTTGCTTCGAAGAGTACTTTAAAGATTTGCCTCCAACCAGTGTACATTTGCTACAAACTCTTCTGTCTGTTGAACCTTACAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAG 519 0.4393 MKQLLSAVEYFHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFIRSGKKHPLTSRVVTLWYRPPELLLGSTDYDSSVDLWSVGCVFAELLVRIPILQGKTEVEQLHKIFKLCGSPSDEYWKRTELPRATLIYNGCFEEYFKDLPPTSVHLLQTLLSVEPYKRGTATSALSSE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37978g00001 173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Trme37978g00001 173 SMART serkin_6 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme37978g00001 173 FunFam Mitogen-activated protein kinase 1 173 - -
Trme37978g00001 173 Gene3D Transferase(Phosphotransferase) domain 1 1 173 - -
Trme37978g00001 173 SUPERFAMILY Protein kinase-like (PK-like) 1 171 IPR011009 -
Trme37978g00001 173 Pfam Protein kinase domain 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme37978g00001 173 PANTHER CELL DIVISION PROTEIN KINASE 1 172 - -
Trme37978g00001 173 ProSiteProfiles Protein kinase domain profile. 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37978g00001 Trme-Chr37978 172 886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37978g00001 1 173 Core Cell Cycle Gene Families AT5G10270 49.162 2.66e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme37978g00001 Pkinase 3.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37978g00001 - - gmx:100796719 290.812