Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37977g00001 CTGATTGATGCAGCAACTGAGACGCGATACTTGAATGCTAGCAATCGAGAACTGTGTCCTCCAAATGAAGCCAGGCTCTCTTCTGATAATCCTGATCCCCCACCTCAGGAAAACAAGGCTCCTTGTCAGCTCCTCCAATTCACATTTCAAGAGCTGAAATCTGCAACTGGAAATTTCAGACCTGATAGCATTCTCGGTGAGGGTGGATTTGGTTATGTTTTTAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCAAAACCTGGTTCAGGAGTTACGGTAGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAACTTCACCATCCCAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACTCGTGGAAGTCTAGAGAATCATCTTTTCAGAAGTGAGTTTCTTCCTTAA 486 0.4465 MIDAATETRYLNASNRELCPPNEARLSSDNPDPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRSEFLP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37977g00001 161 Gene3D Phosphorylase Kinase; domain 1 35 144 - -
Trme37977g00001 161 ProSiteProfiles Protein kinase domain profile. 59 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme37977g00001 161 PANTHER OS01G0588500 PROTEIN-RELATED 41 156 - -
Trme37977g00001 161 Pfam Protein tyrosine and serine/threonine kinase 63 156 IPR001245 GO:0004672|GO:0006468
Trme37977g00001 161 SUPERFAMILY Protein kinase-like (PK-like) 33 158 IPR011009 -
Trme37977g00001 161 ProSitePatterns Protein kinases ATP-binding region signature. 65 97 IPR017441 GO:0005524
Trme37977g00001 161 FunFam Serine/threonine-protein kinase BIK1 27 144 - -
Trme37977g00001 161 MobiDBLite consensus disorder prediction 13 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37977g00001 Trme-Chr37977 2 595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37977g00001 47 155 Glycoside Hydrolase AT3G07070 54.128 7.62e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme37977g00001 PK_Tyr_Ser-Thr 2.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37977g00001 - - gmx:100785385 315.464