Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37962g00001 ATGCTTATGGCCTATGATAATAGAATATTTGCTTTTGAAATTGCAGTTAAAGAAGCTGAGCACTTGAACTGGGGACCAAGACTTAGAATTGCAATGGGAATGGCTTACTGCCTACAACATATGCATGAATTGGATCCTCCTATGGTCCATACCAACTTGAGTTCTTCCGTCGTCCACCTAACCGATGACCACGCAGCGAAAATCTCGGATTTGAGTTTCTCCTACGAAATAGATTCATCCGAAAAGAAACCTGATGGTAAAAAACACAATGACATGATGCAATCAACAAGTCCAGCAAGTAATGTTTACAGCTTTGGTGTTTTGTTATTCGAAATAGTTACCGGTCGAATCCCTTATTCGGTTGATAATAGCTCACACGAAAACTGGGCATCACATTATCTAAAATGGGACAAACCACTTAAGGAAATGGTGGATTCAACTCTAACATCTTACAAAGAAGATCAGGTTGAACAAGTTGCTGAATTGATAAGAGTTTGTGTCGATCCGGATTCGGAGAAGAGACCGAGAATGAATGAAGTGAGTGAGAGATTGAGAGAGATAACGAAAATGTCGCCTGAATTTGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCTGAGATTGAGATTTCTTCTGCATAA 639 0.4006 MLMAYDNRIFAFEIAVKEAEHLNWGPRLRIAMGMAYCLQHMHELDPPMVHTNLSSSVVHLTDDHAAKISDLSFSYEIDSSEKKPDGKKHNDMMQSTSPASNVYSFGVLLFEIVTGRIPYSVDNSSHENWASHYLKWDKPLKEMVDSTLTSYKEDQVEQVAELIRVCVDPDSEKRPRMNEVSERLREITKMSPEFAVPKLSPLWWAEIEISSA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37962g00001 212 Pfam Protein tyrosine and serine/threonine kinase 19 184 IPR001245 GO:0004672|GO:0006468
Trme37962g00001 212 Gene3D Transferase(Phosphotransferase) domain 1 12 196 - -
Trme37962g00001 212 SUPERFAMILY Protein kinase-like (PK-like) 19 204 IPR011009 -
Trme37962g00001 212 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme37962g00001 212 PANTHER PROTEIN MALE DISCOVERER 2 16 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37962g00001 Trme-Chr37962 2 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37962g00001 17 191 Receptor kinase-like Gene Family AT5G49780 31.443 7.40e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trme37962g00001 PK_Tyr_Ser-Thr 9.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37962g00001 - - lja:Lj6g3v0481930.1 268.47