Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3793g00001 ATGGAGTGCAGCAGAACAATAGACCAGATGGTTATCCCTGTGTTCTACGGCGTTAGTCTCTTTGATGTACATCACCAGGGAGGTATGTTTGGAGAAGCTTTTAAAGATCTTGCACAAAGGATCTCCAAGAATGACAAATCGAGTGAAGGTAGCAACATTTTAGGATTTGTGGTGGATTCCAGGAATGAAAGTGAGGATATCAGGAAAGTAGTAGACCATGTTACTGATTTATTAGACAGGACAGACTTATTTGTCCCGGGCCATCCAGTGGGGTTAGAATCTCGGGTACAAGATGTTATTCAACTACTGAACAGGCAACAATCAAAAGATACTCTACTGCTTGGTATATGGGGCATGGGAGGGATTGGCAAAACAACCATTGCTAAAGCCACTTATAATAAAATCCGTCACGATTTTGAGGCAAAGAGCTTCCTAAATGTGAGGGAAGTTTGGGAACAAGATAATGGTGAAGTTTATCTACAACGACGACTTCTTTCTGATATCTACAAAACAGCAAAAGTTAAGGTTGACTATGTGTATAGAATGAATGAAATGGACTGGAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCCGACAATCAATTCCTATAGAAGGTTTCACCGACCTTTCTACAGATGTTGTTAAGTACTGTGGGGGATTGCCGCTAGCTCTTAAAGTCATTGGCTATTTGTTGTGTGGTCGAAATAAACAAGGGTGGAAGAGTGTATTGGAGAAGCTAAAACTCATTCCCAATAATGAAGTGTTAGGGTTGCTTAGAATAAGTTTTGATGATTTATGTGATGATATGAAGGAGATGTTCCTTGATATAGCTTTTTTCTGTATTGGGATGGACCAAGAAGATGTAACTAAAATATTGAAAGACTGGGGACATCATGTAGATACTGGAATAAGTGTCCTTGTACAACAAAGTCTTGTAACCGTTGATCAGATGAACAAGATTGGAATGCATAATATGCTGCAAGAAATGGGAAGAGGAATCATAAGGGGAAA 1016 0.3927 MECSRTIDQMVIPVFYGVSLFDVHHQGGMFGEAFKDLAQRISKNDKSSEGSNILGFVVDSRNESEDIRKVVDHVTDLLDRTDLFVPGHPVGLESRVQDVIQLLNRQQSKDTLLLGIWGMGGIGKTTIAKATYNKIRHDFEAKSFLNVREVWEQDNGEVYLQRRLLSDIYKTAKVKVDYVYRMNEMDWNESLELFSWHAFRQSIPIEGFTDLSTDVVKYCGGLPLALKVIGYLLCGRNKQGWKSVLEKLKLIPNNEVLGLLRISFDDLCDDMKEMFLDIAFFCIGMDQEDVTKILKDWGHHVDTGISVLVQQSLVTVDQMNKIGMHNMLQEMGRGIIRG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3793g00001 338 Gene3D - 1 83 IPR035897 -
Trme3793g00001 338 Gene3D - 190 268 IPR042197 -
Trme3793g00001 338 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 186 337 IPR044974 GO:0006952
Trme3793g00001 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 278 IPR027417 -
Trme3793g00001 338 SUPERFAMILY "Winged helix" DNA-binding domain 255 337 IPR036390 -
Trme3793g00001 338 Pfam NB-ARC domain 93 147 IPR002182 GO:0043531
Trme3793g00001 338 Pfam NB-ARC domain 170 249 IPR002182 GO:0043531
Trme3793g00001 338 Gene3D - 84 189 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3793g00001 Trme-Chr3793 89 2331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3793g00001 174 336 WRKY Transcription Factor Family AT5G45050 34.756 2.54e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3793g00001 - - lja:Lj0g3v0297389.2 358.607