Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37804g00001 ATGATGAAGAGGAACAATATGAGCACAAGTTTGAAAGGCTATCATCACCATACTTATTACAACAACAATCCAATCATCACAAACAAAAGTCCTTCTCATAGTAATAATGGATCATCATCAGAGGATTATATGAATGGATATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAGTTCAAATCAGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCAAGACTTAGACAATCATCACCACCAACTCATGAAGTTCAACCCTCAACTCAAGGTTCTTCTATGCTTAACCTTAATAACCCTACTAACCCTAACTTTTTCTCAAAATCATCTTCATCATCACCATTATCATCATCTTCCTCTTTAGCAACAAATCTTAAGCCTATTACTTGCACTTTACCTTTGTTTGTTGTGGATGGTATTTTGTTGAACCCTACTTTGAGCACAATGACCAAAGAGCCCTTAAGAAAATCAAATATGGAACAATATGATGATTTACCTTGTGAAGATGGATGTAGAATGGTGAAGAAAAGTGAGATTCTAAGGATGGGTTTGGAGATAGGTTTGCCAGGAGATTATGATGATGATAATTTGGATCTTGAGCTTCGTTTGGGGACTACTACTTACTCTAATTAG 657 0.3638 MMKRNNMSTSLKGYHHHTYYNNNPIITNKSPSHSNNGSSSEDYMNGYPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHEVQPSTQGSSMLNLNNPTNPNFFSKSSSSSPLSSSSSLATNLKPITCTLPLFVVDGILLNPTLSTMTKEPLRKSNMEQYDDLPCEDGCRMVKKSEILRMGLEIGLPGDYDDDNLDLELRLGTTTYSN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37804g00001 218 PANTHER OS07G0101800 PROTEIN 33 214 - -
Trme37804g00001 218 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Trme37804g00001 218 Pfam C2H2-type zinc finger 54 78 - -
Trme37804g00001 218 SMART c2h2final6 54 76 IPR013087 -
Trme37804g00001 218 SUPERFAMILY beta-beta-alpha zinc fingers 51 80 IPR036236 -
Trme37804g00001 218 MobiDBLite consensus disorder prediction 81 126 - -
Trme37804g00001 218 MobiDBLite consensus disorder prediction 87 126 - -
Trme37804g00001 218 Gene3D Classic Zinc Finger 50 107 - -
Trme37804g00001 218 MobiDBLite consensus disorder prediction 22 41 - -
Trme37804g00001 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37804g00001 Trme-Chr37804 171 827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37804g00001 35 212 C2H2 Transcription Factor Family AT3G23130 37.097 1.90e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme37804g00001 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37804g00001 - - gmx:100781722 195.667