Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37788g00001 GTGAAAGCAGTATATGTAAAGAACCTTCCAGAAGACATAACTCAGAATCGTCTGAGGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCCGGACAAGAAAAGAGTAGATATGGTTTTGTGCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGCCAAACATTGGAATGCTCACTCGCTAAGCCACAGGCAGATCAGAAGTCATCTGGTACTTCAAATTCGCACCAGTCAGCTGTACTTCCTTATCCATCTCCTCTTGGATATGGTGCTCTTGGTGCAGGATATGGTGCACTTGGTGCAGGATATGGTGCTGCTGGCTTTGCACCGGTAACTTC 389 0.4524 VKAVYVKNLPEDITQNRLRELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTSNSHQSAVLPYPSPLGYGALGAGYGALGAGYGAAGFAPVTS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37788g00001 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 80 IPR000504 GO:0003723
Trme37788g00001 130 Gene3D - 1 121 IPR012677 -
Trme37788g00001 130 SUPERFAMILY RNA-binding domain, RBD 3 102 IPR035979 GO:0003676
Trme37788g00001 130 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 2 83 - -
Trme37788g00001 130 SMART rrm1_1 3 76 IPR000504 GO:0003723
Trme37788g00001 130 MobiDBLite consensus disorder prediction 78 97 - -
Trme37788g00001 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37788g00001 Trme-Chr37788 582 1073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37788g00001 4 84 Eukaryotic Initiation Factors Gene Family AT3G16380 29.630 1.18e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37788g00001 K13161 - csin:114291668 182.57