Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37722g00001 ATGGTGGAACCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGAAGAAGGAAATAAGTCGTGTCCTTTGACGATGATTCCTTTAGATACATCAGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAGGATAGAAACACAATGATTACAATTGCTACATTAAAAGAAAAAATACATCAGTTTGGAGATGATGATGAAGTGATTAATTCACTAAAAACTCTTCAAGATTTGTGTGAGCAGAGAGAGCAACACAGGGAATGGTTGATGCTTGAGGACTACATACTAGTTCTTATTCAAATTCTTGGTTCGAGAAACCGCGATATAAGGAATCATGCTCTTGTCATCCTGTGCATTCTAGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGTAACGGTTGATAATGCAATTGAATCGATCGTCCATTCTCTTGGACGGCGTCAGGAGGAAAGAAAGTTAGCAGTAGCATTACTGCTTGAATTGTCCAAATATGATTTGGCTCGAGAACATATTGGAAAAGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAATGGAGATGACAATCAAGCTGCTGAAGATGCAACCGAGCTATTGGATAATCTTTCGTACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTCAAGCATTTACTGCAGCGTCTCTCCACAG 721 0.3773 MVEPVETSSDQTFERSAIEKWFEEGNKSCPLTMIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVINSLKTLQDLCEQREQHREWLMLEDYILVLIQILGSRNRDIRNHALVILCILAKDNEEAKERIVTVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAAEDATELLDNLSYSDQNVILMAKANYFKHLLQRLST 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37722g00001 240 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 239 - -
Trme37722g00001 240 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Trme37722g00001 240 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Trme37722g00001 240 Gene3D - 60 240 IPR011989 -
Trme37722g00001 240 SUPERFAMILY ARM repeat 63 239 IPR016024 -
Trme37722g00001 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Trme37722g00001 240 SUPERFAMILY RING/U-box 1 60 - -
Trme37722g00001 240 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37722g00001 Trme-Chr37722 178 977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37722g00001 1 238 U-box Gene Family AT1G76390 31.707 7.31e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37722g00001 - - psat:127076110 429.098