Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37699g00001 GATATTACTTCTAGGATTGAACAAACTGGGGCTGTTCCTATACTTGGTCCTCGTGCCAAAGCTACTTTTGAAGAAGATTTTATACGTGATTATCCAAAAACCACAATCTCAAGTCATTTGGGTTCATCTGAAGATGGTGTATATGTTGTGCTGGCTATAATTAGTGATTTGGTCGAGGGGCAGGATTGGTGGTATCCTGCGTGCCGTTGTCACAGAAGTGTCACTGCTGATTCTGGTGCCTACTATTGTAAAGGATGTGTGAAGCATGTCTTTCATATGGTTCCTAGGTTTAAAGTAAAATTTCGTGTTCGTGATGCTACTGGTGATACTATATTTGTTGTTTTCGACTCGGATATGTATTCACTTATTGGAAAGCAGTGTAGTGATCTGGTCTCTGCTGGAAAGGCTGAAAATGCTGGGTTTTATCCAAGTGAATTGAAGGATTTGGTTNGTACTAAGCTGCTCTTTAAGGTTGAGAAATCTTCATCAACCAATGTTTTATTTGATGCAATTAACATTATCGAAAACTTCAATTTGTATTTGTAA 546 0.3828 DITSRIEQTGAVPILGPRAKATFEEDFIRDYPKTTISSHLGSSEDGVYVVLAIISDLVEGQDWWYPACRCHRSVTADSGAYYCKGCVKHVFHMVPRFKVKFRVRDATGDTIFVVFDSDMYSLIGKQCSDLVSAGKAENAGFYPSELKDLVXTKLLFKVEKSSSTNVLFDAINIIENFNLYL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37699g00001 181 PANTHER OS03G0429900 PROTEIN 49 174 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme37699g00001 181 Gene3D - 29 177 IPR012340 -
Trme37699g00001 181 SUPERFAMILY Nucleic acid-binding proteins 39 158 IPR012340 -
Trme37699g00001 181 Pfam Replication factor-A C terminal domain 52 159 IPR013955 -
Trme37699g00001 181 CDD RPA1_DBD_C 33 158 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37699g00001 Trme-Chr37699 106 1011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37699g00001 35 158 Core DNA Replication Machinery Family AT5G08020 28.906 7.32e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37699g00001 - - mtr:11425976 202.601