Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37611g00001 ATGGCACTCATCAAGAAGCTCCGCAAGGCGAAACGTGAGGCACCAGCAGGTGAGAAGCCGGAACCAGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTGAGATGATCGGTAGCATCATTGGTGTCTACAACGGAAAGACCTTCAACCAGGTTGAAATTAAACCTGAAATGATTGGTCACTATCTGGCTGAATTCTCTATCTCTTACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTC 254 0.4843 MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHS 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37611g00001 85 Hamap 30S ribosomal protein S19 [rpsS]. 6 81 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 Gene3D 30s Ribosomal Protein S19; Chain A 1 85 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 NCBIfam 30S ribosomal protein S19 2 85 IPR005713 GO:0003735|GO:0006412|GO:0015935
Trme37611g00001 85 FunFam 40S ribosomal protein S15 1 85 - -
Trme37611g00001 85 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1 85 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 ProSitePatterns Ribosomal protein S19 signature. 45 69 IPR020934 GO:0003723
Trme37611g00001 85 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 2 85 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 Pfam Ribosomal protein S19 2 75 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 PRINTS Ribosomal protein S19 family signature 57 72 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 PRINTS Ribosomal protein S19 family signature 25 44 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 PRINTS Ribosomal protein S19 family signature 45 57 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 SUPERFAMILY Ribosomal protein S19 3 76 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trme37611g00001 85 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37611g00001 Trme-Chr37611 1 763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37611g00001 1 85 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 98.824 1.61e-58 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37611g00001 K02958 - csav:115722952 174.481