Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37462g00001 ATGTCCTCCGATCGACAAAAACCAAAGGAAGAAAGCCAAACTGTAGAAGAAGCACAAAAGGGAGTACCATTTTCAATTTGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGAAGCTACTGAGAATTTTGATGACAAATATCTCATTGGAGTTGGAAGTCAAGGAAACGTTTACAAGGCAGAGTTGTCTGCAGGTACGGTTGTGGCTGTGAAGAAGCTTCATTTAGTAACAGATGAAGAAATGTCAACTTTCAGTTCGAAGTCTTTTAAGAGTGAGATTGAAACCTTAGCAGAAATCAAACACAGGAACATCATTAAACTTATTGGATTTTGCTCACATTCTAAGTTCTCATTTTTGGTTTACAACTTCTTGGAAGGTGGAAGCTTAGATCATATACTAAACAATGACACACATGCCACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTACTTGCATCATGATTGCTCACCTCCTATTATTCACCGCGATATATCAAGCAAGAATGTCCTTCTTAATCTTGACTATGAAGCTCATGTCTCCGACTTCGGGATAGCAAAGTTTCTAAAGCCTGGTTTACTTAGTTGGACCCAATTTGCCGGCACTTTTGGTTATGCAGCACCAGGTTAG 663 0.3891 MSSDRQKPKEESQTVEEAQKGVPFSIWSHDGKMMFENIIEATENFDDKYLIGVGSQGNVYKAELSAGTVVAVKKLHLVTDEEMSTFSSKSFKSEIETLAEIKHRNIIKLIGFCSHSKFSFLVYNFLEGGSLDHILNNDTHATAFDWEKRVNVVKGVANALSYLHHDCSPPIIHRDISSKNVLLNLDYEAHVSDFGIAKFLKPGLLSWTQFAGTFGYAAPG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37462g00001 220 ProSiteProfiles Protein kinase domain profile. 45 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme37462g00001 220 ProSitePatterns Tyrosine protein kinases specific active-site signature. 171 183 IPR008266 GO:0004672|GO:0006468
Trme37462g00001 220 FunFam Leucine-rich repeat receptor protein kinase MSP1 7 125 - -
Trme37462g00001 220 FunFam Os07g0541700 protein 126 204 - -
Trme37462g00001 220 PANTHER LEUCINE RICH REPEAT KINASE 2 12 219 - -
Trme37462g00001 220 SUPERFAMILY Protein kinase-like (PK-like) 27 219 IPR011009 -
Trme37462g00001 220 Gene3D Phosphorylase Kinase; domain 1 4 125 - -
Trme37462g00001 220 Pfam Protein kinase domain 47 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme37462g00001 220 Gene3D Transferase(Phosphotransferase) domain 1 126 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37462g00001 Trme-Chr37462 180 916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37462g00001 5 220 Receptor kinase-like Gene Family AT4G08850 53.917 2.68e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme37462g00001 Pkinase 5.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37462g00001 - - lja:Lj0g3v0284579.1 320.857