Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37460g00001 AGTTTCTTACGAGAGGCAGCATATCCTCAACAGGTTGGCAACAGGAATTTGATGGTGGAAAATGGTATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTTGAGCTGGAACAAACTGCACAGACAGGGATACTAGTATCGTATGATGATATACTAATCGGAGTTTTGGGGGTTGCAGACCCATTAAAGAGAGAAGCATCTGTGGTTATAGAGGGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGCGAACAGCTCGTGCTGTTGCCAAGGAGGTTGGAATCCAAGATGTGAGAGCAGAGGTGATGCCTGCGGGAAAAGCCGAAATTGTTCGTTCATTCCAAAAGGACGGAAGCATAGTTGCAATGGTGGGCGATGGTATCAACGATTCTCCGGCATTAGCAGCTGCTGATGTTGGCATGGCGATTGGAGCTGGAACCGATGTTGCAATAGAAGCTGCTAACTTCGTTTTGATGAGAAATAACTTGGAAGATGTGATCACAGCAATCCATCTTTCCCGGAAGACGTTCTCTCGTATTAGATTGAATTA 566 0.447 SFLREAAYPQQVGNRNLMVENGIDISTEVENFVVELEQTAQTGILVSYDDILIGVLGVADPLKREASVVIEGLQKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKAEIVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANFVLMRNNLEDVITAIHLSRKTFSRIRLN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37460g00001 188 SUPERFAMILY HAD-like 44 188 IPR036412 -
Trme37460g00001 188 Gene3D - 25 187 IPR023214 -
Trme37460g00001 188 FunFam Probable copper-transporting ATPase HMA5 17 186 - -
Trme37460g00001 188 Pfam haloacid dehalogenase-like hydrolase 11 143 - -
Trme37460g00001 188 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 12 188 - -
Trme37460g00001 188 PRINTS P-type cation-transporting ATPase superfamily signature 129 148 - -
Trme37460g00001 188 PRINTS P-type cation-transporting ATPase superfamily signature 152 164 - -
Trme37460g00001 188 PRINTS P-type cation-transporting ATPase superfamily signature 54 65 - -
Trme37460g00001 188 PRINTS P-type cation-transporting ATPase superfamily signature 76 86 - -
Trme37460g00001 188 PRINTS H+-transporting ATPase (proton pump) signature 129 145 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme37460g00001 188 PRINTS H+-transporting ATPase (proton pump) signature 160 185 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme37460g00001 188 PRINTS H+-transporting ATPase (proton pump) signature 101 117 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme37460g00001 188 NCBIfam HAD-IC family P-type ATPase 28 186 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme37460g00001 188 FunFam Copper-exporting P-type ATPase 11 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37460g00001 Trme-Chr37460 114 1076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37460g00001 12 188 Primary Pumps ATPases AT5G44790 76.836 4.57e-90 281