Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37409g00001 GCACAATCATGGCCCATTGCCCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGAAAAACCTTGGGGTATTTGCTTCCAGCATTTATTCATCTCAAGCGTACTAATAATAACGCCAAAATGGGCCCCACTGTTTTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTGCCTGCACTGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCCTGAATGATATTCTTGAGATGAGGAGAATCACTCTTCACCAGGTCTCTTACCTAGTGCTAGATGAGGCAGACCGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCCGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAAGTGAACATTGGCAATGTAGACGAGCTTGTTGCTAACAAGTCCATCACTCAGGTTTGA 564 0.4486 AQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTGPQLRDIDRGADIVVATPGRLNDILEMRRITLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37409g00001 187 SMART ultradead3 1 187 IPR014001 -
Trme37409g00001 187 Gene3D - 1 177 IPR027417 -
Trme37409g00001 187 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 4 170 IPR014001 -
Trme37409g00001 187 Pfam DEAD/DEAH box helicase 1 158 IPR011545 GO:0003676|GO:0005524
Trme37409g00001 187 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 116 124 IPR000629 -
Trme37409g00001 187 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 186 - -
Trme37409g00001 187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 172 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37409g00001 Trme-Chr37409 59 808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37409g00001 8 170 Eukaryotic Initiation Factors Gene Family AT3G19760 30.994 1.94e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37409g00001 K12823 - mof:131168469 332.798