Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme373g00001 ATGTCTTCTTCTTCATACTCCAATCCTCAATGGGTCTACGACGTGTTCCTAAGCTTTAGAGGAAAAGACACACGTAGCAACTTCGTTTCTCATCTACACGCAGCCCTTTCAAATGCAGGAATCAATGCTTTTGTAGACTATAAACTTCACAAAGGAACAGATTTAGGACCAGAACTAATGGAAGCAATAGAAAAATCTCATATATCTATCATTGTTTTCTCCAAAACTTATATTGAATCTACTTGGTGTCTCAATGAGCTTGAAAAAATCATGGAATGCCGCAGAACTCATGGCCATGTTGTTATGCCGGTGTTTTATGACATTGATCCGTCGGTTGTGCGTCATCAACAGGGTGCTTTTGGTAAAACATTGCAAGCTACTGCGAAAAAAAGATACTTAGAAAGAGAATTGAGGGAAAATGTGTTGTCTAGTTGGAGGAGTTCACTCACCCAAGCTGCTAATTTGTCTGGTTGGGATGTCACCAATTACAGACTATCTCGCAACCGATGTGAGACTCTTAGTCTTAACACACCCCCTTGCACTCAATACTATTGGGTTTGGTGCGCGAGTATAAATGGTGGGGGACCGATCAGAAATCTGATAGCAGGTGACTCAGCGGATAGTAGAGGAGACTCTGATACTATCTTAGAATTGAGAGTTAAGTTTAACTCAACCCTAAAAAACCGGCTTATAAGGAGTGAAAATGAGCTGATGAAGCAAATTGTTGAGGACATTTTGACAAAACTAGATATCACATTGTTGTCAATTACTGAATTTCCTATTGGATTGGAATCCCAGGTGGAAAAATTGGTGGAGTTTATTGAAAATCAACCTAAGAAAGTAAGTATGATAGGGGTATGGGGAATGGGTGGATCGGGTAAAACAACCACAGCTAAAGCTATCTACAATCGAATTCATCGCAAATTTGTGGACAGAAGTTTCATTGAAAATGTTAGAGAAGTATGTGAAAATGATAATAGAGGTATTATTCACTTACAAGAACAGCTTCTTTCAGATGTCCTGAAAACAAAGGAGAAGATACACAGCATTGCAGTAGGGGAATATATGATTGAGAAAAGACTTAGGGGGAAAAGGGCACTCGTTGTACTGGATGATGTGACCACCGTTGAGCAATTAAAGGCACTGTGTGGAAATCCTAAATATTTTGGTTCTGGAAGTGTATTGATTGTTACAACTCGAGACGCACGCCTACTGAGTTTACTAAATGTTGACTATCTGTATACAATGAAGGAAATGGACAAAAACCAATCCCTTGAGCTTTTCAGTTGGCACGCTTTTAGACAACCTAATCCAAGTAAAGACTTCAGTGAACTTTCAATCAATGTAGTTTCTTACTGTGGAGGATTACCACTGGCTCTTGAAGTCCTTGGATCTTACTTGTATCAGAGGACAAAACAAGAATGGAAAAGTGTGCTATCAAAATTAGAGAGAATTCCCAACAATCAAGTGCAAGAGAAACTTAGAATAAGCTATGATGGTTTAAAGTATGATATTGAAAAGGACATATTTCTTGACATATGTTGTTTCTTTATTGGTAAGGATAGGGCCTATGTTACCGAGATACTGAATGGTTGTGGACTTTATGCTGATATTGGAATAACTGTCCTCATAGAGAGGAGCCTTGTAAAAGTTGAAAAGAATAACAAGCTTCAAATGCATGATTTGATACGAGACATGGGAAGAGAAATTGTTCGAGAAAGTTCATCAAAAGAGCCTGCAAAGCGTAGTCGGTTGTGGTTTCATGAGGATGTACATGATGTTTTGACAAAAAATACTGTAACAGAAACTGTAGAGGGTTTGGTTTTGAAGTTGCAAAGAAGCAATAAATTTTGCTTCAGTACTGATTCTTTCAAGGGGATGAAGAAACTGAGACTTTTACAACTTGATCATGTTGATCTCACCGGAGATTATCGGTGTCTTTCTACAGACCTGAGATGGGTTCATTGGCAAGGATTTACCTTCAACTATATACCTGATGACTTTTATCAGGAAAATCTAGTTGTTATTGACTTAAAATATAGTAGTATTAAACAAGTTTGGAATGAAACCAAGTTGTTGGAGAATCTAAAAATTCTTAATCTCAGTCATTCCAAGTACTTGAGAAACACACCTGATTTCTCACAATTACCAAATCTTGAAAGTCTTATTATGAAGGACTGTCCAAGTTTGTCTGATGTAAACCCATCCATTGGAGATCTCAAGAATCTTCTTCTGTTAAATTTGAAGGACTGTACAAATCTTAGAAATCTCCCAAGGAAGATCTATCAATTGAAGTCTTTGAAAACTCTCATACTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGACATAGTACAGATGGAATCCTTGACGACGCTGATTGCAAAAGCCTCTCGAAACTTAGAAGTGTTTGGGTTCAATGCCACTCAGAGATTCAACTAA 2445 0.3779 MSSSSYSNPQWVYDVFLSFRGKDTRSNFVSHLHAALSNAGINAFVDYKLHKGTDLGPELMEAIEKSHISIIVFSKTYIESTWCLNELEKIMECRRTHGHVVMPVFYDIDPSVVRHQQGAFGKTLQATAKKRYLERELRENVLSSWRSSLTQAANLSGWDVTNYRLSRNRCETLSLNTPPCTQYYWVWCASINGGGPIRNLIAGDSADSRGDSDTILELRVKFNSTLKNRLIRSENELMKQIVEDILTKLDITLLSITEFPIGLESQVEKLVEFIENQPKKVSMIGVWGMGGSGKTTTAKAIYNRIHRKFVDRSFIENVREVCENDNRGIIHLQEQLLSDVLKTKEKIHSIAVGEYMIEKRLRGKRALVVLDDVTTVEQLKALCGNPKYFGSGSVLIVTTRDARLLSLLNVDYLYTMKEMDKNQSLELFSWHAFRQPNPSKDFSELSINVVSYCGGLPLALEVLGSYLYQRTKQEWKSVLSKLERIPNNQVQEKLRISYDGLKYDIEKDIFLDICCFFIGKDRAYVTEILNGCGLYADIGITVLIERSLVKVEKNNKLQMHDLIRDMGREIVRESSSKEPAKRSRLWFHEDVHDVLTKNTVTETVEGLVLKLQRSNKFCFSTDSFKGMKKLRLLQLDHVDLTGDYRCLSTDLRWVHWQGFTFNYIPDDFYQENLVVIDLKYSSIKQVWNETKLLENLKILNLSHSKYLRNTPDFSQLPNLESLIMKDCPSLSDVNPSIGDLKNLLLLNLKDCTNLRNLPRKIYQLKSLKTLILSGCSKIDKLEEDIVQMESLTTLIAKASRNLEVFGFNATQRFN 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme373g00001 814 Pfam TIR domain 13 151 IPR000157 GO:0007165
Trme373g00001 814 SUPERFAMILY "Winged helix" DNA-binding domain 489 595 IPR036390 -
Trme373g00001 814 Gene3D - 255 412 IPR027417 -
Trme373g00001 814 Gene3D - 7 254 IPR035897 -
Trme373g00001 814 SMART till_3 12 155 IPR000157 GO:0007165
Trme373g00001 814 Gene3D - 418 502 IPR042197 -
Trme373g00001 814 FunFam Disease resistance protein (TIR-NBS-LRR class) 420 502 - -
Trme373g00001 814 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 785 IPR044974 GO:0006952
Trme373g00001 814 SUPERFAMILY L domain-like 608 796 - -
Trme373g00001 814 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 174 - -
Trme373g00001 814 Pfam NB-ARC domain 264 491 IPR002182 GO:0043531
Trme373g00001 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 513 IPR027417 -
Trme373g00001 814 Gene3D Ribonuclease Inhibitor 553 803 IPR032675 -
Trme373g00001 814 ProSiteProfiles TIR domain profile. 11 149 IPR000157 GO:0007165
Trme373g00001 814 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 158 IPR035897 -
Trme373g00001 814 PRINTS Disease resistance protein signature 283 298 - -
Trme373g00001 814 PRINTS Disease resistance protein signature 453 467 - -
Trme373g00001 814 PRINTS Disease resistance protein signature 360 374 - -
Trme373g00001 814 PRINTS Disease resistance protein signature 762 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme373g00001 Trme-Chr373 72 3766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme373g00001 261 779 WRKY Transcription Factor Family AT5G45050 31.868 9.12e-77 269