Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37312g00001 ATGACTAAATGTTTCAATGTAACAGATGAGATGGGCTTGGGTAAAACTGTAGAATTGCTTGCTTGCATCTTTGCTCACCGTAAATCAGCATACGGAAGTGACATACTAATGGATTCAGTTCCCCAAGTCAATGGCGATGAAAAAGTCGCTTTAAAAAGACTAAAAAGAGAGCGTGTGGAGTGCATATGCGGAGCTGTGAGCGAAAGTCTCAAATATCAAGGACTATGGGTTCAGTGTGATATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAGTCACTGAAATCAAAACAAGGATTGGAAAGCAAGGCATATAAAACTACCATAGCTGTGAGGAATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAGGCTACTGAAACTCCTATTGCCTCCGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACG 482 0.4191 MTKCFNVTDEMGLGKTVELLACIFAHRKSAYGSDILMDSVPQVNGDEKVALKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGLESKAYKTTIAVRNGEYVCQMCSELIQATETPIASGATLIVCPAPILPQWHDEIIR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37312g00001 161 ProSitePatterns Zinc finger PHD-type signature. 61 127 IPR019786 -
Trme37312g00001 161 SUPERFAMILY FYVE/PHD zinc finger 57 130 IPR011011 -
Trme37312g00001 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 160 IPR027417 -
Trme37312g00001 161 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 9 161 - -
Trme37312g00001 161 SMART PHD_3 60 128 IPR001965 -
Trme37312g00001 161 Pfam PHD-finger 61 129 IPR019787 -
Trme37312g00001 161 Pfam SNF2-related domain 8 160 IPR000330 GO:0005524|GO:0140658
Trme37312g00001 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 133 IPR013083 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme37312g00001 SNF2_N 1.3e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37312g00001 K15710 - gmx:100776659 291.197