Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37309g00001 ATGAGATCACTATCAACAGCAGGTAGTCCTGAATATTCATCTCTCATATTCAACAATATTCCATCTGGAACTTCTCCATCTCATTTTCCACCTGATCATACACATCTTGGAGGATCAATAATCCCTCCAATGAGACCTATTTCAAACACANNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNACCAACACAATTATTCTCTACAACACAAATGAATCATCAAAATGATGCAATAATGAGAGCAATACAAAATGTTCTATCTACACCCCCCTCTCAACAAAACTTGCATGGAGTTCATCCAGAAGCTAGTGCATTTGGAAGTACTCAAGCGATGCGTCCTTCGAGTAATCAACTTCATCATATGATATCTGARCGACGGAGGCGCGAGAAGCTTAATGAGAATTTTCAAGCACTTAGAGCATTGCTTCCTCAAGGAACTAAG 444 0.3604 MRSLSTAGSPEYSSLIFNNIPSGTSPSHFPPDHTHLGGSIIPPMRPISNTXXXXXXXXXXXXPTQLFSTTQMNHQNDAIMRAIQNVLSTPPSQQNLHGVHPEASAFGSTQAMRPSSNQLHHMISERRRREKLNENFQALRALLPQGTK 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37309g00001 148 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 148 IPR011598 GO:0046983
Trme37309g00001 148 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 148 IPR044658 -
Trme37309g00001 148 MobiDBLite consensus disorder prediction 1 61 - -
Trme37309g00001 148 MobiDBLite consensus disorder prediction 1 29 - -
Trme37309g00001 148 CDD bHLH_AtbHLH_like 121 148 IPR045239 -
Trme37309g00001 148 Coils Coil 122 142 - -
Trme37309g00001 148 Gene3D - 108 148 IPR036638 GO:0046983
Trme37309g00001 148 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 146 IPR036638 GO:0046983
Trme37309g00001 148 Pfam Helix-loop-helix DNA-binding domain 120 145 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37309g00001 114 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 80.000 4.09e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme37309g00001 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37309g00001 - - vvo:131631482 172.555