Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3726g00001 TGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTTTTAGCTAGCCGTGTGAATCCGGTGCCGGCGGAAGGTATGAGAGTAGGACAACAGTTTTTCCCTCTCGGGTCTGGGATCTCGGTGGCTGGGGGTTCGTCTAATACCACCTCTTCTTCATGCTCTGAGGAAGGAGATCTAGAGAATTCTAAAAGAGATAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGTTGGAAGATGATGGTTTGAATGCTGAAGCTGGTGCTCTTAGCTTAAATCTTGCTGGTCAGGCTTCGCCGGTGGTGGAAAGGGAGATTGCAACATGGGATGGTATGAATGGGAAAAAGGGTAGAGTAGTTGGAGGTACTCCGAATCGAGCTGTTTGTCAGGTTGAAGACTGTGGTGCGGATCTGAGTAGAGGTAAGGATTATCACAGACGTCATAAGGTTTGTGAGATGCATTCTAAGGCTAGTAGGGCGCTCGTGGGAAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTCAAGAGTTCGATGAAGGAAAGAGAAGTTGTCGGAGACGCTTGGCTGGCCACAATAAACGGAGAAGGAAAACAAATACTGAAGCTGTTCCTAATGGAAGTCCAACAAACGATGATCAGACTAGTAGTTTTCTGTTGATAAGTTTGTTGAAGATACTTTCAAATATGCATTTTGTCAACAGTGGCGCTCCATTCTGCCGTGGCGGGTGGCCGCCCCCCACACGCTACATCACGTCGCAGAAGGGATTAGTGGCCGCTTCACAGAGAGATATCGTGGAACAGTTCGCGTTCGTGGCGGCGCTACACATGTGCGGAAAAGAACATGAAGCGGAATTTCCACAAATACCCATAAAATTTGACCCGTTACAAAGAAATATCTTCTTCTTTCTTGTATTTTCTCACCGTTTTAGTAGAAAAAGTGAAGTATCAGAGTAG 966 0.4565 WNLNDWRWDGDLFLASRVNPVPAEGMRVGQQFFPLGSGISVAGGSSNTTSSSCSEEGDLENSKRDKEGEKKRRVIVLEDDGLNAEAGALSLNLAGQASPVVEREIATWDGMNGKKGRVVGGTPNRAVCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNTEAVPNGSPTNDDQTSSFLLISLLKILSNMHFVNSGAPFCRGGWPPPTRYITSQKGLVAASQRDIVEQFAFVAALHMCGKEHEAEFPQIPIKFDPLQRNIFFFLVFSHRFSRKSEVSE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3726g00001 321 MobiDBLite consensus disorder prediction 57 71 - -
Trme3726g00001 321 Pfam SBP domain 128 201 IPR004333 GO:0003677
Trme3726g00001 321 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 211 IPR044817 GO:0003677
Trme3726g00001 321 FunFam Squamosa promoter-binding-like protein 14 120 189 - -
Trme3726g00001 321 ProSiteProfiles Zinc finger SBP-type profile. 125 202 IPR004333 GO:0003677
Trme3726g00001 321 SUPERFAMILY SBT domain 126 206 IPR036893 GO:0003677|GO:0005634
Trme3726g00001 321 Gene3D - 120 189 IPR036893 GO:0003677|GO:0005634
Trme3726g00001 321 MobiDBLite consensus disorder prediction 43 71 - -
Trme3726g00001 321 MobiDBLite consensus disorder prediction 192 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3726g00001 Trme-Chr3726 1 1722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3726g00001 1 234 SBP-box Gene Family AT3G60030 51.653 3.13e-68 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme3726g00001 SBP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3726g00001 - - vvo:131643968 416.387