Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37237g00001 ATGCAAATCTACGCAAAGAAGTACTTCTGTGGAAAGATGATCCCATTGAGAGTTAAGACTTCAGACACGATAGTCAATGTGATGAAGAAGATTACTGAAAAGGAAGGGATCCCAGTGGAGCAACAATGTCTGCTATTTGACGGTGTGAAACTAAATGATAAGCTGACCCTTGCCAATTATGACATCCAAGAGAAATCAATCCTCGACCTCGTCCCTTAG 219 0.4155 MQIYAKKYFCGKMIPLRVKTSDTIVNVMKKITEKEGIPVEQQCLLFDGVKLNDKLTLANYDIQEKSILDLVP 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37237g00001 72 Gene3D - 1 72 - -
Trme37237g00001 72 ProSiteProfiles Ubiquitin domain profile. 1 72 IPR000626 GO:0005515
Trme37237g00001 72 PRINTS Ubiquitin signature 33 53 IPR019956 -
Trme37237g00001 72 PRINTS Ubiquitin signature 54 72 IPR019956 -
Trme37237g00001 72 PRINTS Ubiquitin signature 12 32 IPR019956 -
Trme37237g00001 72 SMART ubq_7 1 72 IPR000626 GO:0005515
Trme37237g00001 72 Pfam Ubiquitin family 10 71 IPR000626 GO:0005515
Trme37237g00001 72 SUPERFAMILY Ubiquitin-like 7 71 IPR029071 -
Trme37237g00001 72 PANTHER UBIQUITIN 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37237g00001 Trme-Chr37237 814 1032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37237g00001 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 54.930 9.79e-18 69.7