Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37190g00001 ATGTGGCCCAATAAGGTACCAAACCCTAATTGGCCGGAGAAAAAGGCGATCGATGAGACGTCGTGGACGGATGTTGAGTACTGTAAATTGAGGGGGAAGTGGTATCCGGTGTCGAAGACCGAGGCTGAGAAGGCGGCGTGGGAATTTCGAGAGAAAAATGATGGTATTGATGTGGTGGCAATTCATCCGGGGACTTGTTTGGGGGAGTTGATACAGAAGGAGATGAATGCAAGTTCAGCGGTGTTGCAGAGGTTGATGATGGGGAGCAAGGATACTCAAGAGTGTTATTGGTTGGGGGCTGTTCATGTTAAAGATGTTGCTAGAGCTCATGTGTTGGTTTATGAAACTCCAACTGCTGCTGGTAGATATCTTTGTGTTAATGGGATATATCAGTTTTCTAGTTTTGCTAAAACTGTCTCTGAATTGTATCCTGATTTTCCTATTCACAG 449 0.4521 MWPNKVPNPNWPEKKAIDETSWTDVEYCKLRGKWYPVSKTEAEKAAWEFREKNDGIDVVAIHPGTCLGELIQKEMNASSAVLQRLMMGSKDTQECYWLGAVHVKDVARAHVLVYETPTAAGRYLCVNGIYQFSSFAKTVSELYPDFPIH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37190g00001 149 Pfam NAD dependent epimerase/dehydratase family 34 119 IPR001509 -
Trme37190g00001 149 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 16 147 - -
Trme37190g00001 149 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 144 IPR036291 -
Trme37190g00001 149 Gene3D - 4 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37190g00001 Trme-Chr37190 49 709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37190g00001 6 149 Monolignol Biosynthesis Gene Families AT2G02400 63.889 2.39e-69 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme37190g00001 - - gmx:100795399 230.72