Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme37034g00001 CAAATGTCTAACTCTAACCAGTCATTGGAGAACATGATAACTTGTTCTAAAACACAAGAAGACAAAAAGCCAAAACCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAGCAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAATCATGTAGAAGATATTGGACAAAAGGAGGTACATTAAGAAATGTTCCAGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCATCAACATCAAAAAGAACTCAAGATCAAACATTTCCAACMAATCCAAATAATCCACTCACTTGTTTCCCTTCATTATCTTATGATTCCAATGATCTCACACTTGCATTAGCTAGGCTTCAAAAGGGTCATCTTGGATTTGATCATGAACATGATTTTTCTTCAATTTTAGGAAACCACACAAACATTAACACAAACACCTCATGTGCAATTCTTAACAATCATGGTATGAACAATTCTTCTAACAACCATGGATTCTTTGAAGCACTAATGGGATCTCAGAACAATGTTCAGAATCTTTACTACACCGGCGAAGTAGATAATGGCAATGCTAATGGTGAAATGATGTTACCCTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACAATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTGGGTTTTCCATGGCAGTTCAATAATTCTGACACAAACATGGCTGAAATTGACCACTCAGGAAGAGGTGGTTGGAATGGTCTCAATTCGTCTTGGCATGGCCTTCTCAATAGCCCCCTAATGTAG 843 0.3665 QMSNSNQSLENMITCSKTQEDKKPKPQPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSTSKRTQDQTFPTNPNNPLTCFPSLSYDSNDLTLALARLQKGHLGFDHEHDFSSILGNHTNINTNTSCAILNNHGMNNSSNNHGFFEALMGSQNNVQNLYYTGEVDNGNANGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNSDTNMAEIDHSGRGGWNGLNSSWHGLLNSPLM 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme37034g00001 280 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Trme37034g00001 280 MobiDBLite consensus disorder prediction 76 105 - -
Trme37034g00001 280 MobiDBLite consensus disorder prediction 1 31 - -
Trme37034g00001 280 MobiDBLite consensus disorder prediction 1 15 - -
Trme37034g00001 280 MobiDBLite consensus disorder prediction 82 105 - -
Trme37034g00001 280 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 211 IPR045174 GO:0003700|GO:0006355
Trme37034g00001 280 MobiDBLite consensus disorder prediction 16 30 - -
Trme37034g00001 280 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Trme37034g00001 280 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme37034g00001 Trme-Chr37034 105 947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme37034g00001 29 280 C2C2-Dof Transcription Factor Family AT2G28510 45.489 1.62e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme37034g00001 zf-Dof 8.4e-34 No_clan