Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme369855g00001 GCAAGAAAATCCGACGAAACAGCACTCAAAACAATCCTCGAAGCCGACGATAATCGCGACGTAAACGCCGTAGACTCCGACGGAAGAACCGCATTACTCTTCGTAGCAGGACTCGGCTCAGAGCCGTGCGTTAAACTCTTAGCAGAAGCCGGCGCGAATCTTGACCATCAAGATAACAGCGGCGGCTTATCCGCACTTCACATGGCAGCTGGATATGTAAGACCCGGCGTGGCGAAGCTGCTTTTAGAACTCGGCGCGGATCCAGAAATCACCGACGACCGTGGAAAAACGGCGTTGGATTTAGCTAGAGAGTTA 315 0.527 ARKSDETALKTILEADDNRDVNAVDSDGRTALLFVAGLGSEPCVKLLAEAGANLDHQDNSGGLSALHMAAGYVRPGVAKLLLELGADPEITDDRGKTALDLAREL 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme369855g00001 105 Pfam Ankyrin repeats (many copies) 47 102 IPR002110 GO:0005515
Trme369855g00001 105 ProSiteProfiles Ankyrin repeat profile. 27 59 IPR002110 GO:0005515
Trme369855g00001 105 PANTHER MYOTROPHIN 1 102 - -
Trme369855g00001 105 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Trme369855g00001 105 SUPERFAMILY Ankyrin repeat 16 104 IPR036770 -
Trme369855g00001 105 ProSiteProfiles Ankyrin repeat region circular profile. 27 59 - -
Trme369855g00001 105 ProSiteProfiles Ankyrin repeat region circular profile. 61 93 - -
Trme369855g00001 105 SMART ANK_2a 61 90 IPR002110 GO:0005515
Trme369855g00001 105 SMART ANK_2a 27 56 IPR002110 GO:0005515
Trme369855g00001 105 Gene3D - 1 105 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme369855g00001 16 102 CAMTA Transcription Factor Family AT5G09410 39.785 1.58e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme369855g00001 K12271 - gmx:100818382 175.252