Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36911g00001 ATGTTATCCGATTCCGAAGCTATTCCGTTTATGGATCTCGATTACGGTGCTATCGAACATAAAAACGACGGTGTTGTTCCTGTTCACGGTAACTTCGATCGTTTCACTTCTGCTTACAAGAACAACACACATACAGAGTTAGAAACACCGTCACCGTCGCAGATTAGTAACAGTGTTTCATCGTCAATGGAGGTTGGAGTTGTTCCGGATGGAAACGCCGTATCGGAGATATCAAACTGTGGATACGTTAAAGCGGTGGCGGCGGATCGTGAAGCTAGGGTGTTGAGGTATAAGGAGAAGAGGAAGAATCGAAGGTTCGAGAAAACGATTCGTTACGCTTCTCGTAAAGCTTATGCAGAAACTAGGCCTAGGATTAAAGGAAGGTTTGCTAAACGTAGCGATGCCGTTGATTCTATTTCTGGATACGGCGTCGTTCCGACGTGTTGA 447 0.4541 MLSDSEAIPFMDLDYGAIEHKNDGVVPVHGNFDRFTSAYKNNTHTELETPSPSQISNSVSSSMEVGVVPDGNAVSEISNCGYVKAVAADREARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDAVDSISGYGVVPTC 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36911g00001 148 ProSiteProfiles CCT domain profile. 90 132 IPR010402 GO:0005515
Trme36911g00001 148 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 33 139 IPR045281 GO:0009909
Trme36911g00001 148 Pfam CCT motif 90 132 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36911g00001 Trme-Chr36911 7 541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36911g00001 1 147 C2C2-CO-like Transcription Factor Family AT5G24930 43.915 1.92e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme36911g00001 CCT 5.2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36911g00001 - - gmx:100804201 180.644