Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36868g00001 GCAGGGATTGTACCTGTTGCTTACAGAAGGGTAAGATGCAGGAGAAGAGGTGGAATAAGATTCACCATCAATGGTCATTCTTACTTCAATTTAGTACTTGTCACTAATGTTGGAGGTGCTGGTGATGTACATTCTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTACCTAAATGGACAAAGTCTTTCCTTTGTTGTTACCACAAGTAATGGTCATAGTGTGGTCTCATTCAATGCTGCTCCAGCTAGTTGGTCTTTTGGTCAAACCTACACAGGAAGACAATTCAACTATTAA 339 0.413 AGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNAAPASWSFGQTYTGRQFNY 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36868g00001 112 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 28 107 IPR007117 -
Trme36868g00001 112 Pfam Expansin C-terminal domain 19 96 IPR007117 -
Trme36868g00001 112 Gene3D - 18 111 IPR036749 -
Trme36868g00001 112 SUPERFAMILY PHL pollen allergen 15 107 IPR036749 -
Trme36868g00001 112 FunFam Expansin 18 110 - -
Trme36868g00001 112 PRINTS Expansin/Lol pI family signature 1 17 IPR007118 GO:0005576
Trme36868g00001 112 PRINTS Expansin/Lol pI family signature 55 69 IPR007118 GO:0005576
Trme36868g00001 112 PRINTS Expansin/Lol pI family signature 93 107 IPR007118 GO:0005576
Trme36868g00001 112 PRINTS Expansin signature 29 50 IPR002963 GO:0009664
Trme36868g00001 112 PRINTS Expansin signature 17 29 IPR002963 GO:0009664
Trme36868g00001 112 PRINTS Expansin signature 64 85 IPR002963 GO:0009664
Trme36868g00001 112 PRINTS Expansin signature 93 109 IPR002963 GO:0009664
Trme36868g00001 112 PANTHER EXPANSIN-A15 1 110 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36868g00001 Trme-Chr36868 172 1070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36868g00001 1 112 Expansin Gene Family AT3G29030 84.821 2.11e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36868g00001 K20628 - gmx:100790170 207.994