Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme36837g00001 | ATGGTAGCACCAGTATCTGATAACGGAATCCGTAGCAGAAAGAAATCATCAAGAGGTCACCATAGGTTTGTAGGAGTTCGTCAAAGGCCGTCAGGAAGATGGGTGGCAGAGATCAAAGACTCATTACAGAAAGTAAGGCTTTGGCTTGGAACATTCGACACAGCTGAAGAAGCCGCTCGTGCTTATGACACTGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGGTTTGCCGGAATCTGGAACCAATGGTGGTGTTGGCGCTAAGCGCGGTTCCGGTTCCAACTTCATGCTAGAGAATACTGAGCCTTTTTCTTTTGAAGATGTTAGTGACTCGGGTTCAGGTTCAGAACATGGTCTTCTTGGTGCACTTAAGGCAAAACTTTTCGATGGAAAAGAAGCGAAATTTTCATTTTCATTTCCTTC | 434 | 0.4516 | MVAPVSDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFGLPESGTNGGVGAKRGSGSNFMLENTEPFSFEDVSDSGSGSEHGLLGALKAKLFDGKEAKFSFSFPS | 145 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme36837g00001 | 145 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Trme36837g00001 | 145 | FunFam | ethylene-responsive transcription factor RAP2-11 | 21 | 80 | - | - | |
Trme36837g00001 | 145 | MobiDBLite | consensus disorder prediction | 76 | 97 | - | - | |
Trme36837g00001 | 145 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 18 | 95 | - | - | |
Trme36837g00001 | 145 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Trme36837g00001 | 145 | Pfam | AP2 domain | 22 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Trme36837g00001 | 145 | Gene3D | AP2/ERF domain | 21 | 80 | IPR036955 | GO:0003700|GO:0006355 | |
Trme36837g00001 | 145 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Trme36837g00001 | 145 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700|GO:0006355 | |
Trme36837g00001 | 145 | PRINTS | Ethylene responsive element binding protein signature | 45 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
Trme36837g00001 | 145 | SUPERFAMILY | DNA-binding domain | 23 | 79 | IPR016177 | GO:0003677 | |
Trme36837g00001 | 145 | CDD | AP2 | 22 | 78 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme36837g00001 | Trme-Chr36837 | 1 | 434 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme36837g00001 | 11 | 79 | AP2-EREBP Transcription Factor Family | AT5G19790 | 68.116 | 1.26e-29 | 106 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Trme36837g00001 | AP2 | 2.2e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme36837g00001 | - | - | vvo:131640287 | 234.958 |