Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36837g00001 ATGGTAGCACCAGTATCTGATAACGGAATCCGTAGCAGAAAGAAATCATCAAGAGGTCACCATAGGTTTGTAGGAGTTCGTCAAAGGCCGTCAGGAAGATGGGTGGCAGAGATCAAAGACTCATTACAGAAAGTAAGGCTTTGGCTTGGAACATTCGACACAGCTGAAGAAGCCGCTCGTGCTTATGACACTGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGGTTTGCCGGAATCTGGAACCAATGGTGGTGTTGGCGCTAAGCGCGGTTCCGGTTCCAACTTCATGCTAGAGAATACTGAGCCTTTTTCTTTTGAAGATGTTAGTGACTCGGGTTCAGGTTCAGAACATGGTCTTCTTGGTGCACTTAAGGCAAAACTTTTCGATGGAAAAGAAGCGAAATTTTCATTTTCATTTCCTTC 434 0.4516 MVAPVSDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFGLPESGTNGGVGAKRGSGSNFMLENTEPFSFEDVSDSGSGSEHGLLGALKAKLFDGKEAKFSFSFPS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36837g00001 145 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Trme36837g00001 145 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Trme36837g00001 145 MobiDBLite consensus disorder prediction 76 97 - -
Trme36837g00001 145 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 95 - -
Trme36837g00001 145 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Trme36837g00001 145 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Trme36837g00001 145 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Trme36837g00001 145 MobiDBLite consensus disorder prediction 1 25 - -
Trme36837g00001 145 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Trme36837g00001 145 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Trme36837g00001 145 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Trme36837g00001 145 CDD AP2 22 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36837g00001 Trme-Chr36837 1 434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36837g00001 11 79 AP2-EREBP Transcription Factor Family AT5G19790 68.116 1.26e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme36837g00001 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36837g00001 - - vvo:131640287 234.958