Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36609g00001 ATGAAACTTGTTGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCACAAACACTTGTTGAAGTTCTTTACAGCATCAATGAACAACTTCAAACCGAAGATATCGATGCGCCTCTTACTAAGCTTAGACCAGTTAAGAAAGTTGCTCTTGTTGTTTGTACAGGTGATAGAGGTCTTTGTGGTGGATTCAATAATGCTATATTGAAAAAAGCTGAAGCTAGAATTGCTGAGTTGAAAAATCTTGGTGTTGATTACACTATTATAAGTGTTGGTAAAAAGGGTAACACTTATTTCACACGTAGGCCTTATATACCTGTTGATAGGTTTCTTGAAGGTGGAACTCTTCCTACTGCTAAAGATGCACAAACAATTGCTGATGATGTTTTCTCACTTTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTTTTGTATACTAAATTTGTTTCATTAGTGAAATCAAATCCTATAATTCATACTTTACTACCACTTTCGCCGAAAGGCGAAATATGTGATATTAATGGAAACTGTGTTGATGCTGCTGAAGATGAGCTTTTCAGGTTAACAACAAAAGAAGGAAAGTTAACTGTTGAAAGAGATGCTGTTAGATCTAAGACGATTGATTTTTCGCCTATTTTGCAGTTTGAGCAAGATCCTGTACAAATTCTTGATGCACTTTTGCCACTTTATTTGAACAGTCAAATATTGAGAGCATTGCAGGAATCACTTGCTAGTGAATTAGCTGCTAGAATGAGTGCTATGAGTAGTGCTTGTGATAATGCTGTTGAGTTGAAGAAGAATTTGTCAAGGGTTTATAATAGGGAACGTCAAGCGAAGATTACCGGTGAAATTCTCGAAATTGTTGCTGGTGCTGATGCATTAGTTTAG 906 0.362 MKLVAAAKVRRAQEAVVNGRPFSQTLVEVLYSINEQLQTEDIDAPLTKLRPVKKVALVVCTGDRGLCGGFNNAILKKAEARIAELKNLGVDYTIISVGKKGNTYFTRRPYIPVDRFLEGGTLPTAKDAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSNPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDAVRSKTIDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSACDNAVELKKNLSRVYNRERQAKITGEILEIVAGADALV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36609g00001 301 PRINTS ATP synthase gamma subunit signature 145 162 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 PRINTS ATP synthase gamma subunit signature 278 299 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 PRINTS ATP synthase gamma subunit signature 247 266 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 PRINTS ATP synthase gamma subunit signature 52 71 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 PANTHER ATP SYNTHASE GAMMA CHAIN 1 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 NCBIfam ATP synthase F1 subunit gamma 1 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 FunFam ATP synthase gamma chain, chloroplastic 1 46 - -
Trme36609g00001 301 ProSitePatterns ATP synthase gamma subunit signature. 286 299 IPR023632 -
Trme36609g00001 301 Gene3D ATP synthase, gamma subunit, helix hairpin domain 202 300 - -
Trme36609g00001 301 CDD F1-ATPase_gamma 1 297 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 Hamap ATP synthase gamma chain [atpG]. 1 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 FunFam ATP synthase gamma chain, chloroplastic 48 171 - -
Trme36609g00001 301 Gene3D - 53 181 - -
Trme36609g00001 301 Pfam ATP synthase 1 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme36609g00001 301 Gene3D ATP synthase, gamma subunit, helix hairpin domain 1 52 - -
Trme36609g00001 301 FunFam ATP synthase gamma chain, chloroplastic 197 300 - -
Trme36609g00001 301 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 1 300 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36609g00001 Trme-Chr36609 163 1068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36609g00001 1 300 Primary Pumps ATPases AT1G15700 72.425 8.04e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36609g00001 K02115 - qsa:O6P43_031244 525.398