Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36547g00001 ATGGAGGTTACTTATCAAGACTTACATGAAGCAACTAATGGATTTTCTTCATCCAATTTGGTAGGCGCGGGAAGTTTTGGTTCTGTATTCAAAGGATCTCTTCACAAATTTGAAGGACCTATTGTAGTAAAGGTGTTGAAGCTTGAAACACGTGGGGCATTGAAGAGTTTTATGGATGAATGCAAAGTACTGGAAAAGATGAAACACCAAAATCTTCTCAAGCTCCTAACTTTCTGTTCAAGTGTTGATTATAACGGTGAGGTTTTCAAGGCTATAGTTTTTGAGTTCATGCCTATGGGGAGTCTAGAAAGTTTGTTGCACAACAATGAACATCTTGAGCCAAGAAATTTAAATATCAACCTTCGACAAAGGTTAAGTATTGCTCTCGATGTAGCACAAGCATTGGATTATCTTCACCATAATTCCCATCAAGTTGTAGTTCACTGTGATATTAAGCCAAGTAATGTTCTTCTGGACGATGACATTGTTGCTTACTTAGGAGATTTTGGGTTAGCAAGGTTCCTTCATGGGGCTACAGGGAGTTCCA 547 0.3857 MEVTYQDLHEATNGFSSSNLVGAGSFGSVFKGSLHKFEGPIVVKVLKLETRGALKSFMDECKVLEKMKHQNLLKLLTFCSSVDYNGEVFKAIVFEFMPMGSLESLLHNNEHLEPRNLNINLRQRLSIALDVAQALDYLHHNSHQVVVHCDIKPSNVLLDDDIVAYLGDFGLARFLHGATGSS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36547g00001 182 SMART serkin_6 15 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme36547g00001 182 PANTHER OS04G0122200 PROTEIN 2 177 - -
Trme36547g00001 182 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Trme36547g00001 182 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trme36547g00001 182 SUPERFAMILY Protein kinase-like (PK-like) 3 178 IPR011009 -
Trme36547g00001 182 ProSiteProfiles Protein kinase domain profile. 15 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme36547g00001 182 Gene3D Transferase(Phosphotransferase) domain 1 97 182 - -
Trme36547g00001 182 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1 96 - -
Trme36547g00001 182 Pfam Protein kinase domain 17 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme36547g00001 182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36547g00001 Trme-Chr36547 1 547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36547g00001 2 175 Receptor kinase-like Gene Family AT3G47570 54.494 1.84e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme36547g00001 Pkinase 6.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36547g00001 - - lja:Lj2g3v2736550.1 276.559