Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme365321g00001 | TCTGATGGGAGTGGGAACTATACCAAAGTGATGGATGCTGTGTTAGCAGCACCTGATCATAGCGACAAACGCTATATAATACACATTAAAGAAGGAATTTATAATGAGCATGTTTTGATCGGTATTAACAAGTCAAGCCTCATGATGATTGGAGATGGGATTGATGCCACTGTCATCTCTGGTGACTTAAGCTGGGGGAGAGATAAGCTGGACACATACCAAACTTTTACCGTTGGTGTTGATGGCCCAGGGTTCATTGCTCGGGACATTACCTTCAGGAACACCGCAGGTCCCGAAAATCATCAAGCGGTGGCACTC | 318 | 0.4528 | SDGSGNYTKVMDAVLAAPDHSDKRYIIHIKEGIYNEHVLIGINKSSLMMIGDGIDATVISGDLSWGRDKLDTYQTFTVGVDGPGFIARDITFRNTAGPENHQAVAL | 106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme365321g00001 | 106 | PANTHER | PECTINESTERASE | 1 | 106 | - | - | |
| Trme365321g00001 | 106 | Pfam | Pectinesterase | 2 | 106 | IPR000070 | GO:0030599|GO:0042545 | |
| Trme365321g00001 | 106 | ProSitePatterns | Pectinesterase signature 1. | 21 | 40 | IPR018040 | - | |
| Trme365321g00001 | 106 | Gene3D | - | 1 | 106 | IPR012334 | - | |
| Trme365321g00001 | 106 | SUPERFAMILY | Pectin lyase-like | 1 | 106 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme365321g00001 | Trme-Chr365321 | 1 | 318 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme365321g00001 | 1 | 106 | Carbohydrate Esterase | AT3G43270 | 60.377 | 2.89e-38 | 132 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme365321g00001 | K01051 | - | cave:132165556 | 134.035 |