Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36474g00001 CCCGTTGCGATAAAACGCCTCAAATCGGGCTCTCAACAAGGTGCCAACGAGTTTATGAACGAGATCGAGTTGCTCTCCCAACTTCGGCACATCCACTTGGTGTCCCTTGTGGGATATTGTAATGAAGACCCAGAGATGATTCTGGTTTATGAATTCATGCAACACGGTACTCTCTGCGAGTATCTTTATGGTTCTAATAACCGGTCCCTACCGTGGAAGCAAAGACTTGAGATTTTATTGGGTGCAGCGAGAGGGCTAAATTATCTTCATGCTGAGGTAAAGCACAAGATAATACACCGTGATGTGAAGAGTACCAACATATTGTTGGATGAGAAATGGGTGGCTAAGGTTTCTGACTTCGGGTTATCCAAAGTAGGACCAACGGGGATATCAACGACCCACGTCAGTACGATGGTAAAGGGGAGTCTTGGATATTTAGATCCTGAGTACTATATGTTCCAAAGACTTACTCTTAAATCCGATGTGTATTCCTTCGGTGTGGTGCTTCTTGAGGTGTTGTGTGCAAGACCACCTTTGATTCGCGATTTTGATAAAAAGACAGCTAGTCTAGTTTGTTGGTTTCAAAGATCTTATAATGAAGGTGTGGCGATTGAACAAATAATGGATCCATTTCTAAGGGATTCTATCACAGGTGAGTGTTTGAAATATTATTGCAAGTTGGCGTTGAGTTGTTTGCATGATGATGGCACGCAACGTCCCACAATGAGTCAAGTGATTGAAGGTTTAGAGTTTGTATTACAATTGGTAATGAGTGAGGAAGATAACCAATTTAGTGTCATCCAAATGGAGGGAACAAATAAGGAAGGACCACATCTCTTTCAATTTATGAGTGATGAAGAAAATAATCTACAGTCTGCAAGATTCCAATCCTTCCGGGAGAGCATAGTCTCAGCGAGGCCAAGTACTGATCACGAACAAAGTGAACCTTCATATATTCATGTAAAATCTTAA 972 0.4167 PVAIKRLKSGSQQGANEFMNEIELLSQLRHIHLVSLVGYCNEDPEMILVYEFMQHGTLCEYLYGSNNRSLPWKQRLEILLGAARGLNYLHAEVKHKIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGISTTHVSTMVKGSLGYLDPEYYMFQRLTLKSDVYSFGVVLLEVLCARPPLIRDFDKKTASLVCWFQRSYNEGVAIEQIMDPFLRDSITGECLKYYCKLALSCLHDDGTQRPTMSQVIEGLEFVLQLVMSEEDNQFSVIQMEGTNKEGPHLFQFMSDEENNLQSARFQSFRESIVSARPSTDHEQSEPSYIHVKS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36474g00001 323 SUPERFAMILY Protein kinase-like (PK-like) 2 252 IPR011009 -
Trme36474g00001 323 Pfam Protein tyrosine and serine/threonine kinase 2 248 IPR001245 GO:0004672|GO:0006468
Trme36474g00001 323 ProSiteProfiles Protein kinase domain profile. 1 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme36474g00001 323 Gene3D Transferase(Phosphotransferase) domain 1 54 274 - -
Trme36474g00001 323 PIRSF TyrPK_CSF1-R 223 317 - -
Trme36474g00001 323 PIRSF TyrPK_CSF1-R 1 79 - -
Trme36474g00001 323 PIRSF TyrPK_CSF1-R 64 175 - -
Trme36474g00001 323 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
Trme36474g00001 323 MobiDBLite consensus disorder prediction 304 323 - -
Trme36474g00001 323 FunFam Receptor-like protein kinase FERONIA 53 270 - -
Trme36474g00001 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 97 109 IPR008271 GO:0004672|GO:0006468
Trme36474g00001 323 SMART serkin_6 1 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme36474g00001 323 PANTHER OS07G0166700 PROTEIN 2 255 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36474g00001 Trme-Chr36474 1 972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36474g00001 2 262 Receptor kinase-like Gene Family AT3G51550 62.069 1.25e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme36474g00001 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36474g00001 - - mtr:25497555 516.924