Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36287g00001 ATCCTTGAGAGGGACCAGATTATGAATAGTTTCTACGAGGTGACAGCTCGATTGGAACAATCACTGGATGGAATTTCCTACGATAAGCTTGACATATCCGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTACTCAGTTCAGAAGAGCCAAAGGCAGAGTTGATGAACCAGATGCCAAGTTGTATGAAGATATGTCATCCCTTTACAACAATAGCAGTGACACAGCTACAGATCCAGCTATTCTAAGTCGATTAGCAGACAAATTGCAATTGATGGGAATAGCCGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTAGTGGAGATCCAGGGGCACGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACTTAGTCAAGGATGATACTGCAACAGCAAAAGGCGTTTCTTCAGGATTTTACGGACTCGAGGAAAATGATAAGAATCATCAGGTCCCTGCTATCCCTAGTGATTTTAAATGTCCTATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAG 573 0.4136 ILERDQIMNSFYEVTARLEQSLDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSSLYNNSSDTATDPAILSRLADKLQLMGIADLTQESLALHEMVAASSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTATAKGVSSGFYGLEENDKNHQVPAIPSDFKCPISLELMMDPVIVSTGQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36287g00001 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 191 IPR013083 -
Trme36287g00001 191 ProSiteProfiles U-box domain profile. 167 191 IPR003613 GO:0004842|GO:0016567
Trme36287g00001 191 Pfam U-box domain 168 190 IPR003613 GO:0004842|GO:0016567
Trme36287g00001 191 PANTHER U BOX DOMAIN-CONTAINING 2 191 - -
Trme36287g00001 191 SUPERFAMILY RING/U-box 157 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36287g00001 Trme-Chr36287 388 1075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36287g00001 1 191 U-box Gene Family AT3G46510 56.477 2.21e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36287g00001 - - gmx:100815575 307.375