Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36215g00001 TTTTTATGTGACTTGACGGGAGGTTTTGGTGCAGGTGATAAGAAGGCTGATCCAAAGGCACAGGCATTGAAAACCGCCAATGCAATCAAGTCAGGCACTGCTATTAAGAAGAAGGCAAAGAAGATCAGAACAACTGTCACTTTCCATCGGCCAAAGACACAAACACAGGACAGGAACCCCAAGTACCCTCGCATTAGTGCCACCCCAAGGAATAAGCTTNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCAATGAAGAAAATTGAGGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATTAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCAAAGAAAGTTAATACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGTTGACTCCCGACTACGATGCATTGGATGTAGCAAACAAGATTGGGATTATCTAA 477 0.392 FLCDLTGGFGAGDKKADPKAQALKTANAIKSGTAIKKKAKKIRTTVTFHRPKTQTQDRNPKYPRISATPRNKLXXXXXXXXXXXXXXAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36215g00001 158 Coils Coil 88 95 - -
Trme36215g00001 158 Pfam Ribosomal protein L23 88 140 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trme36215g00001 158 Hamap 50S ribosomal protein L23 [rplW]. 78 158 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trme36215g00001 158 Gene3D - 39 158 IPR012677 -
Trme36215g00001 158 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 87 151 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trme36215g00001 158 PANTHER 60S RIBOSOMAL PROTEIN L23A 13 158 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trme36215g00001 158 FunFam 60S ribosomal protein L23a 37 158 - -
Trme36215g00001 158 Pfam Ribosomal protein L23, N-terminal domain 19 67 IPR005633 -
Trme36215g00001 158 ProSitePatterns Ribosomal protein L23 signature. 136 151 IPR001014 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36215g00001 Trme-Chr36215 19 1090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36215g00001 41 158 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 81.356 1.16e-53 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36215g00001 K02893 - qsa:O6P43_000250 219.55