Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36182g00001 GTTCAAGACGCGATGATTAGCGCAAACTCAAATTCCAATTCCAATGGCGGTGGTGTTGATGAAAACGGCGATAAAGTGAAAGGTTCATGGAGTCCACAAGAAGATGAAACATTGGTGAAATTGGTAAATGAATACGGTGCAAGAAACTGGTCCGTCATAAGCAACGGAATCCCTGGTCGTTCTGGAAAATCATGCCGTCTCCGGTGGTGTAATCAGCTGAGTCCCGACGTTCAACACCGTCCTTTTACTCCGGCGGAAGATAACATCATAATTCAAGCGCACGCAGTTCATGGAAACAAATGGGCGACGATTTCGCGTCTTTTACCAGGTAGAACCGATAACGCGATTAAAAACCATTGGAATTCGACTCTCCGCCGTCGTCGTACGGAGGCGCCGGTGAATCCGATAATGCCGGTGGTTTCCTCCACCGTGAATATCGGAAAACGTGCGTCGAATATGTATGACGGTTATAATAACGGTTTGTTGGATCTCGGTTACGGTTATAAACGGCAATGTGTTGAGAATAATAACGGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGATGCGGGTAATGGTGTTACTGTTATGACGTCGTTAAGTTTGTTTCCACCTGGTGAGAAATTGATGAAAGAAGAAAAAGAGAAAAAAGAAAAGGAACGAGATTTTGATTTTGATGATAATTTGAAGTTACTGGGAAACGATAATTTGAGGTCGATTATTCAGCGTATGATAGCAGAAGAAGTTAGGAATTATGTTGATAACATGCGCCTTGATGGGTTTCAACTTGGAACTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNTTTTTTTAATTTTGTTTAA 852 0.4108 VQDAMISANSNSNSNGGGVDENGDKVKGSWSPQEDETLVKLVNEYGARNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTEAPVNPIMPVVSSTVNIGKRASNMYDGYNNGLLDLGYGYKRQCVENNNGSRDGEETVTEEEDAGNGVTVMTSLSLFPPGEKLMKEEKEKKEKERDFDFDDNLKLLGNDNLRSIIQRMIAEEVRNYVDNMRLDGFQLGTXXXXXXXXXXXFFNFV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36182g00001 283 CDD SANT 81 124 IPR001005 -
Trme36182g00001 283 Gene3D - 81 127 - -
Trme36182g00001 283 PANTHER MYB PROTEIN-RELATED 27 199 - -
Trme36182g00001 283 MobiDBLite consensus disorder prediction 1 32 - -
Trme36182g00001 283 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Trme36182g00001 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Trme36182g00001 283 Pfam Myb-like DNA-binding domain 27 73 IPR001005 -
Trme36182g00001 283 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Trme36182g00001 283 MobiDBLite consensus disorder prediction 1 19 - -
Trme36182g00001 283 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Trme36182g00001 283 Gene3D - 26 78 - -
Trme36182g00001 283 FunFam MYB transcription factor 27 78 - -
Trme36182g00001 283 FunFam Transcription factor MYB44 81 127 - -
Trme36182g00001 283 ProSiteProfiles Myb-like domain profile. 22 73 IPR001005 -
Trme36182g00001 283 CDD SANT 29 71 IPR001005 -
Trme36182g00001 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 73 IPR017930 -
Trme36182g00001 283 SMART sant 26 75 IPR001005 -
Trme36182g00001 283 SMART sant 78 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36182g00001 Trme-Chr36182 160 1011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36182g00001 23 127 MYB Transcription Factor Family AT5G67300 71.429 3.00e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme36182g00001 Myb_DNA-binding 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36182g00001 - - cam:101514420 350.132