Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36131g00001 ATGCTTCGCCTCTGCGAACCATTTTTAGATGCAAATCTAACAAAAAGGGATAAAATTGATGCCAAATATGTACACCACTCAAACCGTTTGAAGCTAAGTGGTTTGACTGCCCTTCATGCGTCATCAGAAGAAGTTACTGAATGGCTTGATAGTAAAAACCCAGCTAAGGCAGGGGAAATGAATCAATGTAATGATGGTGAGAAACGTCTGAAACAATCTCAAGAGGCCAGCAGTTCTGGTAGTAATAATGCCAGTGCAAAATATTCATTTATATGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGGCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGTGAAGATACTCTTGCCACACTTAAAAACATGCAGGGACAGTCACCTTCTCCTCAATTGGAATTGGATATAACTCGACTTGAGAAAGAACTTGAGTTGTATTCACAGGAAAAACTTTGTTATGAAGCTCAGATATTGAGG 507 0.3846 MLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVTEWLDSKNPAKAGEMNQCNDGEKRLKQSQEASSSGSNNASAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKNMQGQSPSPQLELDITRLEKELELYSQEKLCYEAQILR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36131g00001 169 MobiDBLite consensus disorder prediction 50 84 - -
Trme36131g00001 169 Pfam Ubiquitin elongating factor core 1 168 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Trme36131g00001 169 PANTHER UBIQUITINATION FACTOR E4 1 168 IPR045132 GO:0000151|GO:0030433|GO:0034450
Trme36131g00001 169 Coils Coil 139 166 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36131g00001 1 169 U-box Gene Family AT5G15400 70.286 3.03e-75 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36131g00001 K10597 - gmx:100811444 266.159