Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36108g00001 ATGCTTTCTGAAGCTTATTCCTATTTTGTCAGAGCTCAAATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTCACGGCTGCTGAGAAGGCGAGTCAGATTGATTCGCGAAATCTTGAAGTTGCTGTTTTGCTTAACAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAATGATCTTTTTAAATCGGAACGGTTCACTGAAGCTTGCTCGGCATACGGGGAAGGTTTGAGATTGGATCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAAATCAATTGAAGACTCTAATCAAGCATTAAGTATCCAACCAAATTATACAAAAGCTCTTCTTCGAAGAGCTACATCATACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTTAAAGATTATGAGGTCTTGCGAAAAGAACTTCCAAATGACAATGCAGTTGCTGAATCTCTTTTTCATGCGCAAGTTGCGCTAAAGAAATCTCGTGGAGAAGAAGTATCTAATTTAAAGTTCGGCGGTGAAGTGGAAGTAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTTACCTGGTGTTTCTGTTGTCCATTTTGAAGTTGCATCAAATTCGCAATGCAAGCAAATATCGCCATTTGTGGATACACTATGTAGTCGATATCCATCTATTAACTTCCTCAAG 705 0.4043 MLSEAYSYFVRAQIEMALGRFENAVTAAEKASQIDSRNLEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEKSIEDSNQALSIQPNYTKALLRRATSYSKLERWEEAVKDYEVLRKELPNDNAVAESLFHAQVALKKSRGEEVSNLKFGGEVEVVSGLEQFRTAISLPGVSVVHFEVASNSQCKQISPFVDTLCSRYPSINFLK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36108g00001 235 Pfam Tetratricopeptide repeat 121 151 IPR019734 GO:0005515
Trme36108g00001 235 SUPERFAMILY Thioredoxin-like 145 235 IPR036249 -
Trme36108g00001 235 CDD TRX_family 190 235 - -
Trme36108g00001 235 SUPERFAMILY TPR-like 56 168 IPR011990 GO:0005515
Trme36108g00001 235 Gene3D Glutaredoxin 170 235 - -
Trme36108g00001 235 SMART tpr_5 85 118 IPR019734 GO:0005515
Trme36108g00001 235 SMART tpr_5 51 84 IPR019734 GO:0005515
Trme36108g00001 235 SMART tpr_5 119 152 IPR019734 GO:0005515
Trme36108g00001 235 SMART tpr_5 5 38 IPR019734 GO:0005515
Trme36108g00001 235 Pfam Tetratricopeptide repeat 6 36 IPR019734 GO:0005515
Trme36108g00001 235 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 235 IPR044534 -
Trme36108g00001 235 ProSiteProfiles TPR repeat profile. 85 118 IPR019734 GO:0005515
Trme36108g00001 235 Pfam Tetratricopeptide repeat 87 118 IPR001440 GO:0005515
Trme36108g00001 235 Gene3D Tetratricopeptide repeat domain 2 169 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36108g00001 Trme-Chr36108 20 1006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36108g00001 50 195 U-box Gene Family AT3G07370 30.055 6.75e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36108g00001 - - gmx:100795358 428.713