Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3609g00001 ATGGGGATGCCAGGGATCGGTAAAACAGCCATTGCCAAAGTTATTTATGACCTGATTGGTCCTTATTTTGAAAACAATTACTTTCTCCATGATATCAAGAATCAGAATAAAAAGAATAATCTAGTTTCTTTACAACAGAGTATTCTTTGTAGGAGAGCTCAATTTAAAACACCTGAGAATGGAGCACGTGTTATGAAAAGTACATTTGAAGATAAAAGGATACTTCTTGTACTTGACGATGTTGATAAATTGGAGCAGCTAAATGCTTTGTGTGGAAGTCATAAATGGTTTGGTGAAGGTAGCAAAGTAATCATAACGACAATAGATAGGAAACTATTTAAGAAGTATGGAGCTGTCCATATATACAAAGTGAAAGAACTGGATGAAAGTGAATCGCTTGAGCTTTTTAATTGGAAAGCATTCAGGCAAGCAACTTCTCGAGAAGGTTTTGATGAACTTTCGAGCCAGGTAGTTGCTTATTCTGGGGGATTGCCTCTTGCTCTTAAAATTCTTGGGTCCTTATTGTATGGGAACACAATATCTAGATGGGAGTCTATGTTGGATAGGTTCAAAATGGTTCCTCAAAAAGATGTACAAGGAATTCTAGAAGATAGGTTTAATGATTTGAATGATGAAGAGAAACAAATATTCCTGTATATTGCATGTCACTTTAACGGGATGGACAAAAATGACGTACTCCATACATTAAATAGGTCAACACAATGCACAGATCTTCAAATAAGTATCCTTGAAGACAAGAGCCTTGTAACCATTAATGAGAATAACAAGCTTCAAGTGCATGTTCTGCTACAAGCTATGGCAGGATATATCATTAGTAGCAAAACACGTCATGAGACTTATCATAAGGTGAGTGGAAAGYTGTACGACGTGTTCTTGAGTTTCAGAGGGAAAGATACTCGGGAAAAGTTCATGYCACATCTCTACTCCTCTCTTCAAAATGCGGGGATTCATGCTTTTAGAGRCGACAACGAGATTCAACAAGGAGATCAGATCTCACTCTCACTGTCGCAAGCAATTGGATGGTCTAGAATTTCTATAGTTGTTTTGTCTACAAATTATGCTAATTCAAGATGGTGTATGGAAGAGTTGGAGAAGATCATGAAAATAGGCATGACCAGGAGTCTGGTGGTTGTGCCAGTGCTCTACGAGGTAGATCCCTCCGAAGTACGTCATCAGAAAGGTCAGTTTGGAGAAAACTTTGATAATCTTTTATCAAAAGCCTCAGTGGATGAATCCACAAAGAGTAATTGGAGAACTGCCCTCTTTGATATTGCTGGCATAGCAGGGCCTCGGTAA 1317 0.3819 MGMPGIGKTAIAKVIYDLIGPYFENNYFLHDIKNQNKKNNLVSLQQSILCRRAQFKTPENGARVMKSTFEDKRILLVLDDVDKLEQLNALCGSHKWFGEGSKVIITTIDRKLFKKYGAVHIYKVKELDESESLELFNWKAFRQATSREGFDELSSQVVAYSGGLPLALKILGSLLYGNTISRWESMLDRFKMVPQKDVQGILEDRFNDLNDEEKQIFLYIACHFNGMDKNDVLHTLNRSTQCTDLQISILEDKSLVTINENNKLQVHVLLQAMAGYIISSKTRHETYHKVSGKLYDVFLSFRGKDTREKFMXHLYSSLQNAGIHAFRXDNEIQQGDQISLSLSQAIGWSRISIVVLSTNYANSRWCMEELEKIMKIGMTRSLVVVPVLYEVDPSEVRHQKGQFGENFDNLLSKASVDESTKSNWRTALFDIAGIAGPR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3609g00001 438 SUPERFAMILY Toll/Interleukin receptor TIR domain 291 436 IPR035897 -
Trme3609g00001 438 SUPERFAMILY "Winged helix" DNA-binding domain 197 282 IPR036390 -
Trme3609g00001 438 FunFam Disease resistance protein (TIR-NBS-LRR class) 291 438 - -
Trme3609g00001 438 ProSiteProfiles TIR domain profile. 293 438 IPR000157 GO:0007165
Trme3609g00001 438 SMART till_3 294 434 IPR000157 GO:0007165
Trme3609g00001 438 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 283 IPR044974 GO:0006952
Trme3609g00001 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 220 IPR027417 -
Trme3609g00001 438 PRINTS Disease resistance protein signature 68 82 - -
Trme3609g00001 438 PRINTS Disease resistance protein signature 161 175 - -
Trme3609g00001 438 Gene3D - 126 210 IPR042197 -
Trme3609g00001 438 Gene3D - 290 438 IPR035897 -
Trme3609g00001 438 Gene3D - 1 120 IPR027417 -
Trme3609g00001 438 Pfam TIR domain 295 428 IPR000157 GO:0007165
Trme3609g00001 438 Pfam NB-ARC domain 1 205 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3609g00001 Trme-Chr3609 759 2290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3609g00001 2 284 WRKY Transcription Factor Family AT5G45050 32.982 2.19e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3609g00001 - - mtr:11411578 498.819